Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02660 ATGACTACGAGACCCTGCGACTACTGTGGCCACTCCACAGCGCTTCTCTACTGCAGAGCCGATTCAGCCAAACTCTGCTTCTCCTGCGACCGCGAAGTTCACTCCACCAACCAGCTCTTCTCCAAGCACACGCGCACGCTCCTCTGCGACGCATGCGATCACTCCCCTGCCACCATACTCTGTTCCACCGAAGCCTCTGTTCTCTGCCAGAACTGCGACTGGGAGACCCACAACCCCTCTCTCTCTTCCCTCCACCAGCGCGGCCCCCTTGAACCCTTCACCGGCTGCCCCTCCGTCTCCGAGCTCTTGTCCATCCTCGCCTTTCGCGATGTCACCAAAAAAACTCTGCTTTCTCCGCCCCACGCAACTCCTGCTGATGCCTCCTTCTCCTCTGAGATCGAAGGCTTTTCTGATTTCTTTGTTTGGGACGCTCCTTCTGTTGTTACCATCGACGATTTGATTTCTTCTTCCGCTTCTTCCCACACCTTTCAGGCCATGGAGGTTCCTCCTCTGCCCAAGAATCGAAAGGCTGCTTGTGGGCAACACAGAGAAGAGATTCTAAGTCAGCTTCGTGAATTGGCCAAGTCTGAGCCTTTGGACCTTGAGCAGTATGTGCCATCTGAGAACTTGTCCTCGGGTTTTGAACGCGATGTGGAGCCTGATATCTTTCCTTCTCATGAGTGGCATAGAGAAAGCACTGAGCCTATGTATCAGGTTGTTCCTCCTGACACACCATTGGGAACTTATACTGAAGAAATTCCAGTTAAACATTCTACTTCTGCTGTTGGGGAAACTGACACCCATGGCAACCATGGAGGGAATCCACCCATTTCTTTCAAGTCTGAAATCCTACCAACTACTCCCAGAGCTGCGGCATGTGAGTTAAATAGCCAAGAAAGAGATTCTGCATTATTACGGTACAAGCAGAAGAAGAAAACAAGAAGATTTGACAAGCACATAAGGTATGAATCACGAAAAGTTCGGGCTGAAACCAGGGTAAGAGTCAAGGGCCGATTTGCCAAGATGGATCAGGAACACTGA 1041 0.5101 MTTRPCDYCGHSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDHSPATILCSTEASVLCQNCDWETHNPSLSSLHQRGPLEPFTGCPSVSELLSILAFRDVTKKTLLSPPHATPADASFSSEIEGFSDFFVWDAPSVVTIDDLISSSASSHTFQAMEVPPLPKNRKAACGQHREEILSQLRELAKSEPLDLEQYVPSENLSSGFERDVEPDIFPSHEWHRESTEPMYQVVPPDTPLGTYTEEIPVKHSTSAVGETDTHGNHGGNPPISFKSEILPTTPRAAACELNSQERDSALLRYKQKKKTRRFDKHIRYESRKVRAETRVRVKGRFAKMDQEH 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02660 346 MobiDBLite consensus disorder prediction 261 282 - -
Cca03g02660 346 Pfam CCT motif 300 342 IPR010402 GO:0005515
Cca03g02660 346 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Cca03g02660 346 CDD Bbox1_BBX-like 5 48 - -
Cca03g02660 346 ProSiteProfiles Zinc finger B-box type profile. 44 90 IPR000315 GO:0008270
Cca03g02660 346 Pfam B-box zinc finger 48 87 IPR000315 GO:0008270
Cca03g02660 346 SMART bboxneu5 49 90 IPR000315 GO:0008270
Cca03g02660 346 SMART bboxneu5 1 48 IPR000315 GO:0008270
Cca03g02660 346 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 3 344 - -
Cca03g02660 346 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Cca03g02660 346 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02660 Cca-Chr3 47924655 47929443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02660 4 315 C2C2-CO-like Transcription Factor Family AT2G47890 41.796 8.21e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Cca03g02660 CCT 2.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02660 - - gmx:100817838 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02660 03 47924655 47929443 Cca03g02660 03 47924655 47929443 ECH
Cca03g02660 03 47924655 47929443 Cca02g01196 02 29601983 29604220 PCT