Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02649 ATGGTGTGGTCGTACAAGCTCTCTGCAATCACTGACTCTGCCTCTGCATGCAAACATGGCAATGGAGGCCACACTTTTCCTTCAATGAGAAGAACGAGAGACATGGACGctgctgctgcttctgctcctgcttctgcttctgcttctgcttctgcCGCTGCTGCACAACCTCTTCCTCCTGACAATGGCGTGGAATCGTGTGATGAATTGTCTCGTGAACTATGGCGTGCATGTGCGGGAACACCAGTTTATATTCCTCGCGATGGGGAGAAGGTTTACTACTTCCCTCAAGGTCACTTGGAGCAGGTTGCTGCATATACTCAGCATCAGCAAGACGGCCAAATGGAAATTCCTGTGTTTGATTTGCCTTCTAAGATCTTATGCAGGGTTATGTATGTTCACTTAAAGGCCGAACCTTTCACTGATGAGGTTTTTGCTCAAATTACATTAGCTCCGATGTGCAAGCAAGGTGACCTTCGTTTAGAGGAAGAGGGGAATGATGGCAGACCTAAAATCTACTCCTTTAGCAAGACACTCACTCCATCAGACACAAGCACACATGGTGGATTCTCCATTCCGAAGAGACACGCTGATGAATGCTTCCGTCCTCTGGACATGACTCATCAAACACCAGCACAGGAAATTGTTGCCAAGGACATGCACGGGTTTGAGTGGCATTTTCGTCACATATATCGTGGTCAGCCGAAACGACACTTGCTTACTAGCGGTTGGAGCACATTCGTGACATCAAAGAGACTTGTTCCTGGAGATTCATGCGTTTTCGTTAGTGGGGAAAATGGAGGACATCGTGTTGGGATTCGTCGGGCAGTGAATCACAGCCATGCACCCCCATCTTCAACTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGACTAATGTTTCCCATGCTATTGCCACAGGAACAATTTTCACTGTCTATTACCACCCATGGATGAATCCCTTTGAATTTGTTGTTCCTCTGAAACACTATTTGAACTCAACTGTGCCCAACTATTCAATTGGAACGAGAGTACAAAAGCATTATGAACTTGTTGAAGAGCCTTTCAGAAGATATGCTGGTACGATAGTTGGTAGGGAGGATATCGATAGCATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATACCATACTAGATGCCTACAACCATCCTGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTCGGGATCTGCCAAGGAAACGCATGTTCCTGTTCTCCCCTCCCCAAAAAGGGCACACATACTTAACCAGCGCCCTTTGCCTGGATTAAGTGGCTTTGCCATGGATGGTGCTGTTCAGAATTCAGCCAAACCTGCATCTCAGGCTCAGAGAGTGGGTAGGGACTTGCAAGGTCAAGATTACAATGGCAGATGCTCTCCACAGCCTCTGCAAACACCACCATCAACTGATGGAATGCGCCCATCGAAGGTCTCAGCCAGTGGCTCTCGGTTTGGGAAAGAGAGTCAGAATCAGCTTCCCTATCTCATCCAAGACCCTCTTCGTAAATCTCTTGGGAGACCAAAGTCCTTTGCACATGAAGACTTGTCAAGTTCAAGTTTAAGCTCCATTGGTTCTGAATCGCTGGGATGGCCCTCTTCTGAATCTAGAAATGAAAATGAAGTTCCTTTTGACAAACTTGGTGGTTGTAGTAAGTACAAGCTTTTTGGGGTTAGCTTAATCGACCGTCCACCTGAGCTCCCTTCACGTCAATTTGACGTTTTCAACAAATTTTCAAGCCTCGTTACTAGTCCTCCAATGTCTGTTGCCTCAGGAAAAACATGCAACAAGTGTCGCTCTGTTAATAATCGAAGCTGCACAAAGGTGCTTAAGCTGGGAACTGCTCTTGGAAGAGCAGTTGACCTCACTCGTTTTCTTGGATATGATGAACTCGTTGCTGAACTTGACTCGATGTTTGATTTCGGAGGAAGCTTGATCAATGGAAGGAGTGGATGGCATGTGACCTGCATAGATGATGATGGAGACATGATGCTCTTAGGGGATTACCCATGGCAGGATTTCCTGGGTATGGTGCAAAAGATGATCATATGCCCAAAGGATGGTGTTAACAATTTCAATCCAAGCACCTCAGCAGATCCTCCAACCCTTTAG 2148 0.4544 MVWSYKLSAITDSASACKHGNGGHTFPSMRRTRDMDAAAASAPASASASASAAAAQPLPPDNGVESCDELSRELWRACAGTPVYIPRDGEKVYYFPQGHLEQVAAYTQHQQDGQMEIPVFDLPSKILCRVMYVHLKAEPFTDEVFAQITLAPMCKQGDLRLEEEGNDGRPKIYSFSKTLTPSDTSTHGGFSIPKRHADECFRPLDMTHQTPAQEIVAKDMHGFEWHFRHIYRGQPKRHLLTSGWSTFVTSKRLVPGDSCVFVSGENGGHRVGIRRAVNHSHAPPSSTLISGHSMQLGILTNVSHAIATGTIFTVYYHPWMNPFEFVVPLKHYLNSTVPNYSIGTRVQKHYELVEEPFRRYAGTIVGREDIDSIRWPGSEWRCLKVQWDTILDAYNHPERVCPWWIEPSGSAKETHVPVLPSPKRAHILNQRPLPGLSGFAMDGAVQNSAKPASQAQRVGRDLQGQDYNGRCSPQPLQTPPSTDGMRPSKVSASGSRFGKESQNQLPYLIQDPLRKSLGRPKSFAHEDLSSSSLSSIGSESLGWPSSESRNENEVPFDKLGGCSKYKLFGVSLIDRPPELPSRQFDVFNKFSSLVTSPPMSVASGKTCNKCRSVNNRSCTKVLKLGTALGRAVDLTRFLGYDELVAELDSMFDFGGSLINGRSGWHVTCIDDDGDMMLLGDYPWQDFLGMVQKMIICPKDGVNNFNPSTSADPPTL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02649 715 SMART B3_2 175 277 IPR003340 GO:0003677
Cca03g02649 715 MobiDBLite consensus disorder prediction 525 550 - -
Cca03g02649 715 Pfam Auxin response factor 302 384 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca03g02649 715 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 65 708 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca03g02649 715 MobiDBLite consensus disorder prediction 438 509 - -
Cca03g02649 715 Gene3D - 172 277 IPR015300 -
Cca03g02649 715 ProSiteProfiles PB1 domain profile. 616 699 IPR000270 GO:0005515
Cca03g02649 715 ProSiteProfiles B3 DNA-binding domain profile. 175 277 IPR003340 GO:0003677
Cca03g02649 715 MobiDBLite consensus disorder prediction 524 552 - -
Cca03g02649 715 Gene3D - 612 705 - -
Cca03g02649 715 PANTHER AUXIN RESPONSE FACTOR 65 708 - -
Cca03g02649 715 MobiDBLite consensus disorder prediction 447 509 - -
Cca03g02649 715 Gene3D - 339 414 - -
Cca03g02649 715 Pfam AUX/IAA family 657 695 IPR033389 -
Cca03g02649 715 SUPERFAMILY DNA-binding pseudobarrel domain 170 299 IPR015300 -
Cca03g02649 715 Pfam B3 DNA binding domain 175 276 IPR003340 GO:0003677
Cca03g02649 715 CDD B3_DNA 174 275 IPR003340 GO:0003677
Cca03g02649 715 SUPERFAMILY CAD & PB1 domains 619 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02649 Cca-Chr3 47819799 47835754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02649 68 706 B3 DNA Binding Superfamily AT1G59750 40.183 2.31e-144 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca03g02649 B3 2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02649 - - gmx:100802387 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02649 03 47819799 47835754 Cca03g02649 03 47819799 47835754 ECH