Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g02646 | ATGCCATATCATATGCACATCAATCTTGAGCTCCTGGAGGCCGTACATCTTGTATCTGCTATGCTGCTGGAAGTTCCTAATATGGCAGCAAATATTCATGATGCAAAACGTAAGGTCATCAGTAAGACTTTCCGCCGCTTGCTTGAGGTAAGTGATAAACAAACATTCACTGGTCCACCAGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGTTTCTTATCAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGAGACACTGTGCTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTGTTTACCTTCTCTTCATCTTATGAATCCTTGAGCGTGGATCAGCTCACAAAATTTTTTGATCTCTCTGTGTCTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCATCTGGGTGCATTATTTTCCAAGATGTTGAATACTCAAGGCTACAGGCATTGGCATTCCAGTTAACAGAGAAATTATCTATCCTTGCTGAGAGTAATGAAAGAGCAACGGAGGCAAGGATAGGTGGTGGTGGATTGGATTTGCCTCTAAGGCGGAGAGATGGCCAGGACTAtgctgctgctgctgctgGTAGTGGAACAGCCTCTTCAGGTGGTAGATGGCAAGACCTGTCCCATTCTCAGCCAAGGCAAAGCAGTGGGCGGGCAGGGTATGGTGGTGGAAGGCCAATGGCATTAGGCCAAGCAGCTGGTAGTGGCTATTCAAGGGATCGAAGAACAGGTGCTGGTTATCAAAGTGCACGGTACCAAGATGGTTCATATGGAGGTTCAGGGAGGACTCAAGGGGGTTCAGCATTGAGGGGACCCCAGGGTGATGTATCTACACGCATGGTTAGCCTTAAGGGTGTTCGTGCTTAA | 966 | 0.4555 | MPYHMHINLELLEAVHLVSAMLLEVPNMAANIHDAKRKVISKTFRRLLEVSDKQTFTGPPENVRDHVMAATRFLIKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSVDQLTKFFDLSVSRTHSIVSRMMINEELHASWDQPSGCIIFQDVEYSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAGSGTASSGGRWQDLSHSQPRQSSGRAGYGGGRPMALGQAAGSGYSRDRRTGAGYQSARYQDGSYGGSGRTQGGSALRGPQGDVSTRMVSLKGVRA | 321 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g02646 | 321 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C | 1 | 294 | - | - | |
| Cca03g02646 | 321 | ProSiteProfiles | PCI domain profile. | 3 | 175 | IPR000717 | - | |
| Cca03g02646 | 321 | Pfam | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | 1 | 35 | IPR008905 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
| Cca03g02646 | 321 | SUPERFAMILY | "Winged helix" DNA-binding domain | 99 | 174 | IPR036390 | - | |
| Cca03g02646 | 321 | Gene3D | - | 107 | 178 | IPR036388 | - | |
| Cca03g02646 | 321 | MobiDBLite | consensus disorder prediction | 282 | 304 | - | - | |
| Cca03g02646 | 321 | Pfam | PCI domain | 43 | 171 | IPR000717 | - | |
| Cca03g02646 | 321 | PANTHER | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED | 1 | 294 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
| Cca03g02646 | 321 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 104 | 192 | - | - | |
| Cca03g02646 | 321 | MobiDBLite | consensus disorder prediction | 231 | 250 | - | - | |
| Cca03g02646 | 321 | MobiDBLite | consensus disorder prediction | 221 | 321 | - | - | |
| Cca03g02646 | 321 | SMART | PINT_4 | 104 | 192 | IPR000717 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g02646 | Cca-Chr3 | 47809982 | 47810947 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca03g02646 | 1 | 321 | Eukaryotic Initiation Factors Gene Family | AT3G56150 | 62.805 | 2.56e-120 | 365 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g02646 | K03252 | - | ccaj:109797232 | 605.905 |