Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02644 ATGGCGGAAGAGAGTAAATCTAGCGAGGAAAGTGTGAAGCTGTTCGTAGGGCAAGTGCCGAAGCACATCACCGAAGCAGAACTCCTTGCAATGTTCAAGGAGTTCGCACTCGTCGACCAGGTCAACATAATCAAGGACAAAGCAACTCGCGCTTCACGAGGTTGTTGCTTCCTCATTTGTCCCTCCAGGGAAGAGGCTGATAAGGCCGTCAATGCCTGTCACAATAAGAAGACGCTACCCGGGGCATCTAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAGCTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCACTTTTCTCCAAGTATGGTACTATAAAAGATTTACAGATTTTAAGAGGTTCTCAGCAAACTAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTATTGCTGCTTTGGAGGAAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTAGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCCGTCATTGTTTGGAGCCGTGCCTATGAGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCCCCTGGAGGTTATGGGATTATGCCATATCGCCTGCTTCCAATGCAGAATCAACATGGTTTCCATAATATGATGCCTCACATGAATCAAGGAAATGCATTACGGCCTGAACTTGGCCCCAATATGAACCCTAGAAATTATCATGTGCCTCCTGCAAATTATGTTGGTTCTTATCCTGCTGTGCCAGGTCTACAACATGCTGTGGCATATCCTGCAGGAATGATTAGTCCAAGGCCCATGAATACTTCTCCCGGTTCTGTTTCACCTGTTGGTGGAAATAACAACTCTGCTGCATCTTCTGGCACCAGTAAAAATTCTGGTGGTCAGGTTGAAGGACCACCTGGTGCCAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATATGGAAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCCCCCGAGGCTGCTCAATCTGCCATCGGTATGATGAATGGATGCCAATTAGGAGGCAAGAAATTAAAGGTCCAGCTCAAGAGGGATAACAAGCAGGGTAAACCATACTGA 1287 0.4382 MAEESKSSEESVKLFVGQVPKHITEAELLAMFKEFALVDQVNIIKDKATRASRGCCFLICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQAIAALEEINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHPSLFGAVPMSYVPPYNGYGYQAPGGYGIMPYRLLPMQNQHGFHNMMPHMNQGNALRPELGPNMNPRNYHVPPANYVGSYPAVPGLQHAVAYPAGMISPRPMNTSPGSVSPVGGNNNSAASSGTSKNSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPYGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIGMMNGCQLGGKKLKVQLKRDNKQGKPY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02644 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 421 IPR000504 GO:0003723
Cca03g02644 428 Gene3D - 314 420 IPR012677 -
Cca03g02644 428 PANTHER RNA BINDING PROTEIN 5 415 - -
Cca03g02644 428 CDD RRM1_2_CELF1-6_like 13 89 - -
Cca03g02644 428 SUPERFAMILY RNA-binding domain, RBD 6 94 IPR035979 GO:0003676
Cca03g02644 428 Gene3D - 97 189 IPR012677 -
Cca03g02644 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 78 IPR000504 GO:0003723
Cca03g02644 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 165 IPR000504 GO:0003723
Cca03g02644 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 415 IPR000504 GO:0003723
Cca03g02644 428 SMART rrm1_1 344 417 IPR000504 GO:0003723
Cca03g02644 428 SMART rrm1_1 13 89 IPR000504 GO:0003723
Cca03g02644 428 SMART rrm1_1 101 176 IPR000504 GO:0003723
Cca03g02644 428 MobiDBLite consensus disorder prediction 182 205 - -
Cca03g02644 428 CDD RRM3_CELF1-6 345 417 - -
Cca03g02644 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 12 27 IPR002343 GO:0003723|GO:1990904
Cca03g02644 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 105 120 IPR002343 GO:0003723|GO:1990904
Cca03g02644 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 120 132 IPR002343 GO:0003723|GO:1990904
Cca03g02644 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 161 178 IPR002343 GO:0003723|GO:1990904
Cca03g02644 428 Gene3D - 1 96 IPR012677 -
Cca03g02644 428 CDD RRM1_2_CELF1-6_like 101 176 - -
Cca03g02644 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 93 IPR000504 GO:0003723
Cca03g02644 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 180 IPR000504 GO:0003723
Cca03g02644 428 SUPERFAMILY RNA-binding domain, RBD 100 423 IPR035979 GO:0003676
Cca03g02644 428 MobiDBLite consensus disorder prediction 307 338 - -
Cca03g02644 428 MobiDBLite consensus disorder prediction 307 337 - -
Cca03g02644 428 MobiDBLite consensus disorder prediction 190 205 - -
Cca03g02644 428 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 5 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02644 Cca-Chr3 47785580 47795675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02644 340 424 Eukaryotic Initiation Factors Gene Family AT1G71770 40.909 5.73e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02644 K13207 - gmx:100813239 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02644 03 47785580 47795675 Cca02g01188 02 29478450 29482742 PCT