Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02638 ATGCCGGCTGGTCACGGTTTGAGATCTCGCACGAGAGACTCCTTCTCTCGTCCCTTCAGGAAGAAGGGTACCATCGCCCTCACCACCTACCTCCGAACCTACCACATCGGCGACTACGTTGACATCAAGGTTAACGGCGCCGTCCACAAGGGCATGCCTCATAAGTTCTACCATGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATTGGCGTCGAGGTCAACAAGCAGGTTGGGAATAGGATTATCAGGAAGAGGATTCACGTGCGTGTTGAGCATGTGATGCCTTCACGGTGCACTGAGGAGTTCAGGTTGAGGAAGATTAAGAATGACCAACTCAAGGCTGAGGCTAAGGCCAAGGGTGAGAAGATCAGCACCAAGAGGCAGCCCGAGGGTCCTAAACCCGGGTTCATGGTTGAAGGTGCTACCTTGGAGACTGTTACTCCCATTCCTTATGATGTTGTTAATGACCTCAAGGGAGACGACCAGATGCATGTAGGAAACATGAAAACACCTTTCACCCTCTCCCATCTCCTGCTACTGCTTATTTTTTCTGCTGGATTAGCCTCTGAGTTTGTAGTGCGAGGGCGTGCTCATGGGGTGAAGATCCCAGAACATTGGTGCCACAAGCTGATCCATTTAAGCAATTGTGAGTTGCAGAAATGTTTTCAAGAGTGCTCTAAAGAACCATATGGCATTGGAGAATGCAAGGACTCTACTTGCTTCTGCACATACTATTGCAAAGATCCTCCCTTATAA 765 0.5059 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEKISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGDDQMHVGNMKTPFTLSHLLLLLIFSAGLASEFVVRGRAHGVKIPEHWCHKLIHLSNCELQKCFQECSKEPYGIGECKDSTCFCTYYCKDPPL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02638 254 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Cca03g02638 254 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Cca03g02638 254 PANTHER 60S RIBOSOMAL PROTEIN L21-1 1 162 - -
Cca03g02638 254 PANTHER 60S RIBOSOMAL PROTEIN L21 1 162 IPR001147 GO:0003735|GO:0005840|GO:0006412
Cca03g02638 254 MobiDBLite consensus disorder prediction 118 139 - -
Cca03g02638 254 Gene3D - 99 156 - -
Cca03g02638 254 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Cca03g02638 254 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02638 1 162 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 83.951 5.18e-102 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02638 K02889 - gmx:100305629 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02638 03 47739146 47742583 Cca03g02638 03 47739146 47742583 ECH