Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02630 ATGGCTTCAAGATTCTGGACTCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGACGAGGAGATTGAAACCGCGGCAGGTGATTCTGCTAATCAAGCTGTTACAAGCAGGTACTTGCAGGACAATGCAAGTGACAGTGATGATTCTGATGGCCAAAAGCGCGTTGTGCGCTCGGCAAAAGACAAGCGGTTTGAGGAGATGGCGTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAGCAGCTTGAGAAGGTTATGCGTGTCACTGAGTCTGAGAAGGTGCCGAATCTTTACATCAAGGCACTTGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCTAAGGCATTGAACTCCATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGAGTTGATTAATAAGTGCAGGGAGAGTCCTGAgagtgaggaggagaaagaggaggaggaaagcgaggaagaatatgagagtgatgatgagATTATTGAGCCGGAGCAGCTTAGAAAACCTGAGGCAAAATCTGATTCGGAAGCCTCTCAGTATGATGATGAAAAGGCAGATGCCGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACCGGCTTTTGGACAGACAGTTCATGAAAGACCCTAGCGAGATCACATGGGACACAGTTAACAAGAAGTTCAAAGAGGTTGTGGCTGCTAGGGGGAGGAAGGGAACTGGCAGATTTGAACAGGTTGAGCAGCTTACTTTCTTAACCAAGGTTGCTAAGACCCCTGCGCAGAAGCTGGAAATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTTAATGGGCATATGCCCATAAATGTGTGGAAAAAATGTGTGCAAAACATGCTGGTGATTCTTGATATTCTAGTGCAGTACCAAAATATAGTGGTTGATGATTCGGTGGAACCAGATGAGAATGAAACTCAGAAAGGGCCTGACTATGATGGAACAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGATGTTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGGGACTATGTTGAGAGACTCAAGGATGAGCCCTTGTTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTTGGGAATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGATGCAATGAAAAAATTGTCTGAGCTGACAGAGGATGGAGAGCATGCAGGGGAGGCAAGTGAGGAGTCGAAGGGATTTGAGGAATCAAGAATTCCTACTGCATTTGTTGTTACCCCGGAGGTTGTGGCCAGGAAACCTACCTTCCCTGAGAATAGCAGGACCATAATGGATGTATTGGTATCATTGATATACAAGCATGGAGACGAGCGAACTAAAGCACGTGCAATGCTTTGTGATATATACCACCATGCTCTTCTCGATGAGTTCTCAGTAGCCCGGGATCTGCTGCTAATGAGCCATTTACAAGATAGTGTTCAGCATATGGACATTTCAACACAGATACTTTTTAACAGGGCCATGTCACAGTTAGGTTTATGTGCTTTTCGGGTTGGACTGATTTCGGAAGCACATGGTTGTCTTTCTGAACTGTACTCTGGTGGAAGGGTGAAAGAATTGCTGGCGCAAGGTGTGTCTCAAGGTCGTTATCATGAGAAGACTCCTGAACAGGAAAGGTTGGAAAGAAGACGTCAGATGCCATATCATATGCACATCAATCTTGAGCTCCTGGAGGCCGTACATCTTGTATCTGCTATGCTGCTGGAAGTTCCTAATATGGCAGCAAATATTCATGATGCAAAACGTAAGGTCATCAGTAAGACTTTCCGCCGCTTGCTTGAGGTAAGTGATAAACAAACATTCACTGGTCCACCAGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGTTTCTTATCAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGAGACACTGTGCTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTGTTTACCTTCTCTTCATCTTATGAATCCTTGAGCGTGGATCAGCTCACAAAATTTTTTGATCTCTCTGTGTCTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCATCTGGGTGCATTATTTTCCAAGATGTTGAATACTCAAGGCTACAGGCATTGGCATTCCAGTTAACAGAGAAATTATCTATCCTTGCTGAGAGTAATGAAAGAGCAACGGAGGCAAGGATAGGTGGTGGTGGATTGGATTTGCCTCTAAGGCGGAGAGATGGCCAGGACTAtgctgctgctgctgctgGTAGTGGAACAGCCTCTTCAGGTGGTAGATGGCAAGACCTGTCCCATTCTCAGCCAAGGCAAAGCAGTGGGCGGGCAGGGTATGGTGGTGGAAGGCCAATGGCATTAGGCCAAGCAGCTGGTAGTGGCTATTCAAGGGATCGAAGAACAGGTGCTGGTTATCAAAGTGCACGGTACCAAGATGGTTCATATGGAGGTTCAGGGAGGACTCAAGGGGGTTCAGCATTGAGGGGACCCCAGGGTGATGTATCTACACGCATGGTTAGCCTTAAGGGTGTTCGTGCTTAA 2817 0.4427 MASRFWTQGGSDSEEEESDYDEEIETAAGDSANQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRESPESEEEKEEEESEEEYESDDEIIEPEQLRKPEAKSDSEASQYDDEKADAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQYQNIVVDDSVEPDENETQKGPDYDGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLKDEPLFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMKKLSELTEDGEHAGEASEESKGFEESRIPTAFVVTPEVVARKPTFPENSRTIMDVLVSLIYKHGDERTKARAMLCDIYHHALLDEFSVARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQGRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANIHDAKRKVISKTFRRLLEVSDKQTFTGPPENVRDHVMAATRFLIKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSVDQLTKFFDLSVSRTHSIVSRMMINEELHASWDQPSGCIIFQDVEYSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAGSGTASSGGRWQDLSHSQPRQSSGRAGYGGGRPMALGQAAGSGYSRDRRTGAGYQSARYQDGSYGGSGRTQGGSALRGPQGDVSTRMVSLKGVRA 938
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02630 938 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cca03g02630 938 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 911 - -
Cca03g02630 938 SMART PINT_4 721 809 IPR000717 -
Cca03g02630 938 MobiDBLite consensus disorder prediction 175 193 - -
Cca03g02630 938 MobiDBLite consensus disorder prediction 45 64 - -
Cca03g02630 938 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 873 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cca03g02630 938 Gene3D - 727 795 IPR036388 -
Cca03g02630 938 MobiDBLite consensus disorder prediction 848 867 - -
Cca03g02630 938 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 - -
Cca03g02630 938 MobiDBLite consensus disorder prediction 12 26 - -
Cca03g02630 938 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Cca03g02630 938 MobiDBLite consensus disorder prediction 155 174 - -
Cca03g02630 938 MobiDBLite consensus disorder prediction 135 154 - -
Cca03g02630 938 MobiDBLite consensus disorder prediction 194 229 - -
Cca03g02630 938 MobiDBLite consensus disorder prediction 134 229 - -
Cca03g02630 938 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 911 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cca03g02630 938 MobiDBLite consensus disorder prediction 1 64 - -
Cca03g02630 938 Coils Coil 144 171 - -
Cca03g02630 938 MobiDBLite consensus disorder prediction 899 921 - -
Cca03g02630 938 MobiDBLite consensus disorder prediction 838 938 - -
Cca03g02630 938 Pfam PCI domain 660 788 IPR000717 -
Cca03g02630 938 MobiDBLite consensus disorder prediction 30 44 - -
Cca03g02630 938 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca03g02630 Cca-Chr3 47668496 47673456 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02630 1 938 Eukaryotic Initiation Factors Gene Family AT3G56150 67.891 0.0 1204
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02630 K03252 - gmx:100779751 1604.34
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02630 03 47668496 47673456 Cca03g02630 03 47668496 47673456 ECH