Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02623 ATGGAGTCTCAGGTGAAGCATGCTATTGTCGTCAAAGTTATGGGGCGTACTGGATCCAGAGGACAGGTGACCCAGGTCAGAGTGAAGTTTTTAGATGATCAGAACCGACACATAATGAGGAATGTGAAAGGACCAGTGAGAGAGGGAGACATTCTCACCCTACTTGAGTCTGAAAGGGAAGCGAGAAGGTTGCGCTAG 198 0.4848 MESQVKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02623 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Cca03g02623 65 Coils Coil 54 65 - -
Cca03g02623 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Cca03g02623 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 - -
Cca03g02623 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Cca03g02623 65 Gene3D - 1 65 IPR012340 -
Cca03g02623 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Cca03g02623 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Cca03g02623 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02623 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 6.47e-36 113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02623 03 47622334 47623746 Cca03g02623 03 47622334 47623746 ECH