Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02617 ATGGATTTGGAATCTTCCGGCGATTCCGTTAAATGTTGTAATCACTGTGTGTGCGGGTGTATTGATTGCTCCATGGCAGCTCAATCTTCTGGGAATTGGCTCCGTTCTGTGAAAAGGAAGCACAAGGAGTTTGACCAGAACGGCCAATTCCCTGATCAGGATCCGGTGGCGCGTGTGGAGATTGGGAATGAATGTGATGCATTGCGTGAGGCAGTGAGCAGCCAACAGAAATCAATACAGGATTTGTATGAAGAATTGGAGGAGGAGAGGAATGCTGCGTCCACGGCGGCGAATGAGACTATGTCAATGATATTGAGGTTGCAGAGGGAGAAGGCAGAGCTTCAAATGGAAGCGCGCCAGTTCAAGAGGTTTGTGGAGGAGAGGACTTCACATGATCACCATGAGCTATTGGCATTGGAGGATTTGTTGTATCAGAGAGAACAGGCAATCCAGTCTCTCTCGTGTGAGGTTCAGGCTTATAAGCACAGGTTGATGAGTTATGGCCTCACTGAATCGGAGGCAGAAGGTGATGCCTATGAATTCCCCCCTTATGAGTACCCCCCTTTGAGATGTAATGCAATGCATGCTGATAATGATGAAATAGACATCGATAAATATGCGTTTGGCGAAACTCCTAAGGACCGTTTGAGGAACCTTGAAACTAGAATATCTCAAATGGAGAGAAGTCCCACTTATAGCCAAATGGATGGGGAGTTCAATGGAAAAAACATTCTAGAGAAGGTGATAGTTGGACATTCTCCAAGATGGGCTAAACATTCCAGGAAAATTTCCTGCGACTCGTCTTCATTTTGTCCCGAGTATATGATGGATTCTCCTAAGCTCAGTGGTAGCTTTAGGAAGATGGATTGTTTCTCACAATCGGATGACGTTTCCCCTTTGAAGAAAGTAGATAATGCATCAGAAGCTGGTGATGATATGATTGATAAAGTCTATACAATTGACTCTGATTTCAAAGGTGGAGTTGGTGTTTACGATGATTTTGCAACCACACCAAGGGAGTTCGTTAATCATGCGGATTTTGAAGATCCGTACGTAAAGAAGCTTTGCATGAGGCTTCAAACACTTGAGGCTGATAGAGAATCAATGAGGCAGGCAATCATTTCAATGCGCACTGATAAAGCACAGCTTGTTTTACTGAAGGAAATAGCTCAACAATTGTGCAAAGAGATGTCACAGCAAAAGAAAATGACAGCACGATCCTTTATTAGCAGCTTGCCATTCTTGACAGTTTTCAAGTGGGTTGCGTCAATTGTTTTCTGGAGAAAGAGAGCTCATGAAATCAAGTATATGTTCGGGCTACCGTCTGACAGTGCAGGCTTGCTAATGCTGCTTGACAAGGGACCCCATGCTTGGCCGCAACCCCACATAGAGACCAGCCAGAGGCACCTTGCCGTCGACAGCACTCGAAGGATGCGGAGCTTCGGGATGAGAAACTTGTTGTCCCGTGTCAACAGAAAAACAAAGAAAAGATTCAGAAACTGCACTTCCTTAACAAAAGAGTTATCACGCTTAGTGGAACAGCAAGAAGAAGTTACCGATGAAGGTTTCAGCATCAAAAGCTCTGCCCCATCACACACTCACGGCGTTCAGCCCTTGGGAAACCTCTATCTGAACCCATCTTCCACTAACTCCAGAGACACTGGCTTAGGTAATCTTCACACCCTTTCCGATGAGCTTCTTCTCGACATTCTCGGATTTTTGGATTCCACTAGCTTAGGTGTTTTGGCCACTGTTAGCAAGTCCTTCTACGTCTTCACCAACCACGAACCCCTTTGGAGGAATCTCGTCTTGGAGAATCTTCTCGGAGGGTTTCACTATAAAGGGTCTTGGAAATCCACCTATGTTGCTGCTTCCTTCCCTTCATTTGATACCTCCACCATTGCTCTTGGGGGTTTCAAAGTTCGAGACTTTTACTCCGATTACCTTTTCCAGAGTTGGCTCTGTGCCAATCTCGAAATGAAGCCAGAGTGGTTGGAGAGGGATAATGTGGTTCGGAAGAGGGGCATTTCGATTCAAGAGTTTGTGTTGAATTTCGAGGAGCCTAATAAGCCCGTGTTGTTGGAAGGGTGTATTGATAATTGGGGTGCTTTGAGAAATTGGGATAGGGATTATTTAGTGCGGTTGTGTGGTGATGTTAGATTTTCAGTTGGGCCGGTGGAGATGAAGCTTAGAGACTATTTTGGGTACTCGGATCAGGTTAGAGAGGAAAGGCCTTTGTATTTGTTTGATCCTAAGTTTGCTGAGAAAGTTCCGAAATTGGGGGATGAATATGAAGTTCCTGTGTACTTTAGGGAGGATTTGTTTGGTGTTTTGGGCAATGAGAGGCCTGATTATAGGTGGATTATTATTGGACCAGCTGGATCTGGATCTTCTTTCCATGTTGATCCGAATTCGACCTCGGCGTGGAATGCAGTGATCAAGGGGTCCAAGAAATGGGTATTGTTTCCTCCTGATGTGATTCCGCCCGGTGTTCATCCTAGCCCTGATGGGGCGGAGGTGGCTTCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAACAAAGGACTGGAAAAAGAAACCAATTGAGTGCATATGTAAAGCTGGAGAGGTTATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAACTATGTTAGTAGGTGA 2706 0.4512 MDLESSGDSVKCCNHCVCGCIDCSMAAQSSGNWLRSVKRKHKEFDQNGQFPDQDPVARVEIGNECDALREAVSSQQKSIQDLYEELEEERNAASTAANETMSMILRLQREKAELQMEARQFKRFVEERTSHDHHELLALEDLLYQREQAIQSLSCEVQAYKHRLMSYGLTESEAEGDAYEFPPYEYPPLRCNAMHADNDEIDIDKYAFGETPKDRLRNLETRISQMERSPTYSQMDGEFNGKNILEKVIVGHSPRWAKHSRKISCDSSSFCPEYMMDSPKLSGSFRKMDCFSQSDDVSPLKKVDNASEAGDDMIDKVYTIDSDFKGGVGVYDDFATTPREFVNHADFEDPYVKKLCMRLQTLEADRESMRQAIISMRTDKAQLVLLKEIAQQLCKEMSQQKKMTARSFISSLPFLTVFKWVASIVFWRKRAHEIKYMFGLPSDSAGLLMLLDKGPHAWPQPHIETSQRHLAVDSTRRMRSFGMRNLLSRVNRKTKKRFRNCTSLTKELSRLVEQQEEVTDEGFSIKSSAPSHTHGVQPLGNLYLNPSSTNSRDTGLGNLHTLSDELLLDILGFLDSTSLGVLATVSKSFYVFTNHEPLWRNLVLENLLGGFHYKGSWKSTYVAASFPSFDTSTIALGGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISIQEFVLNFEEPNKPVLLEGCIDNWGALRNWDRDYLVRLCGDVRFSVGPVEMKLRDYFGYSDQVREERPLYLFDPKFAEKVPKLGDEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWVLFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKDWKKKPIECICKAGEVIFVPSGWWHLVINLEESIAITQNYVSR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02617 901 Pfam F-box-like 564 604 IPR001810 GO:0005515
Cca03g02617 901 Gene3D Cupin 651 900 - -
Cca03g02617 901 SMART cupin_9 746 899 IPR003347 -
Cca03g02617 901 ProSiteProfiles GTD-binding domain profile. 63 161 IPR007656 -
Cca03g02617 901 SUPERFAMILY F-box domain 554 622 IPR036047 GO:0005515
Cca03g02617 901 ProSiteProfiles JmjC domain profile. 755 901 IPR003347 -
Cca03g02617 901 Gene3D - 548 626 - -
Cca03g02617 901 ProSiteProfiles F-box domain profile. 556 602 IPR001810 GO:0005515
Cca03g02617 901 Coils Coil 501 521 - -
Cca03g02617 901 SMART fbox_2 562 602 IPR001810 GO:0005515
Cca03g02617 901 Pfam Cupin-like domain 680 898 IPR041667 -
Cca03g02617 901 Pfam Zein-binding 67 157 IPR007656 -
Cca03g02617 901 SUPERFAMILY Clavaminate synthase-like 675 901 - -
Cca03g02617 901 Coils Coil 65 124 - -
Cca03g02617 901 Coils Coil 352 372 - -
Cca03g02617 901 PANTHER ZEIN-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 1 447 - -
Cca03g02617 901 PANTHER BNAANNG28530D PROTEIN 1 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02617 Cca-Chr3 47531209 47539096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02617 550 901 Glycosyltransferase AT1G78280 39.779 9.54e-74 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca03g02617 Cupin_8 1.2e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02617 - - ccaj:109797361 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02617 03 47531209 47539096 Cca03g02617 03 47531209 47539096 ECH