Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02613 ATGGCTGTGAGTATGGAAAATGCAAGTACATCCAGCTTAGCGAGAACGAAATCGGATCAGCTAGCGGAGTTGGCGGCGGAGGCAACAGGTGTGAAGTCGCCGCCGTCGGCGGAGGGTGGCGGAACGCTATCAAGGAAATCGAGCCGGAGGATGATGGCGGCGTCGCCGGGTCGCGGCGGGGGGAAAAACGCGCACATAAGAAAGGCAAGGAGCGCTCAGTTGAAGGTTGAGGTGGATGAGGTTAACAGCGGCGTGGCTCTAAGCCGAGCTTCGAGTGCCAGCTTGGGGCTCTCATTCTCCTTCACCGGCTTCACTCTGCCTCCTGATGAAATCGCCGATTCCAAACCTTTCAGCGACGACGATATCCCGGAGGATATTGAAGCAGGAACTCGTAAGCCGAAGTTTCAGACTGAACCTACTCTGCCAATATATCTGAAGTTCACTGATGTGACCTACAAGGTGGTGATTAAAGGCTTAACTACAACTAAGGAGAAGGATATCCTGAAGGGGATCACTGGTTCTGTAAATCCTGGGGAAGTTTTGGCATTGATGGGTCCTTCAGGAAGTGGAAAGACGTCTTTGTTAAATCTGCTAGGAGGAAGGTTAATTCAGTCCACAACTGGTGGCTCTATCACTTACAATGACCAACCTTATTCCAAGATCCTAAAGAGCAGGATTGGATTCGTGACACAAGATGATGTTCTGTTTCCTCACCTTACTGTGAAGGAAACATTGACATATGCAGCCCGCCTAAGATTGCCAAATAAATTAACGAAAGAGGAAAAGGAAAAACGAGCTTTAGATGTCATCGATGAGCTGGGATTGGGGAGGTGTCAAGATACTATGATAGGAGGTTCCTATGTTCGAGGAATATCTGGTGGAGAGAGGAAGAGAGTTTGTATTGGCAATGAGATCATAATCAACCCTTCTCTTCTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCCACAACAGCCTTAAGGATAGTTCAAATGCTACAAGACATAGCAGAGGCTGGCAAAACCGTAGTGACAACAATTCATCAGCCATCAAGCAGACTCTTCCATAAATTTGATAAGTTGATCCTTCTAGGAAAAGGGAGCTTGCTATACTTTGGAAAAGCATCCGAAGCAATGGACTATTTCCAGTTTATAGGGTGTACACCTCTTATTGCCATGAACCCTGCAGAGTTTTTACTAGACCTTGCAAATGGAAACGTAAATGACATTTCTGTACCATCAGAGTTAAAGGATAAAGTGCAGATGGGAAATGCTGAAGCTGAAACATGCAATGGGAAACCATCAGCTTCAGTTGTACAAGAGTATCTGGTGGAGGCATATGATTCTCGAGTTGCAGAAATAGAGAAGACAAAGTTAATGGTTCCTGTCCCCCTTGATGAAGAAGTGAAGTCTAAGGTTTGTTCTTACAAAAGAAATTGGGGAGCAAGTTGGTTTGAGCAATTTTCTATATTGTTTTCCAGAGGATTCAAAGAAAGGAGACATGACTATTTTAGCTGGTTGAGAATCACCCAAGTTCTTTCCACTGCTGTCATATTAGGATTACTCTGGTGGCAATCAGATGCTAAAAACCAAAAAGATTTGCAAGATCAGGCAGGACTGCTTTTCTTTATTGCTGTATTTTGGGGATTCTTTCCTGTGTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGACAAAGGAACGAACAACGGATATGTACAGACTAAGTGCATATTTCATGGCTAGAACAACGAGTGACCTTCTACTAGACCTGGTTTTACCAGTGTTTTTCCTCCTTGTTGTTTATTTCATGGCCAGTTTGAGACTCAGTGCAGGGCCTTTTTTCCTCAGTATTCTTACAGTTTTTCTCTGCATCATAGCAGCTCAGGGACTTGGACTTGCTATTGGGGCCACACTAATGGACTTGAAAAGGGCAACAACTTTGGCTTCAGTAACTGTGATGACTTTCATGCTGGCTGGAGGCTTTTTTGTGAAGAAAGTCCCTATATTTATATCTTGGATTCGTTACATATCTTTCAACTACCATACGTACAAACTATTGCTCAAGGTTCAATATGAACACATGACACCTACCATAAATGGGATTCGAATTGACAGTGGATTCACAGAAGTTGCTTCTCTGATAGCCATGGTTTTTGGTTACCGTTTATTGGCATATGTTTCTTTACGGCGGATGAAACTTCAAGCTGGAAGTTAA 2226 0.4385 MAVSMENASTSSLARTKSDQLAELAAEATGVKSPPSAEGGGTLSRKSSRRMMAASPGRGGGKNAHIRKARSAQLKVEVDEVNSGVALSRASSASLGLSFSFTGFTLPPDEIADSKPFSDDDIPEDIEAGTRKPKFQTEPTLPIYLKFTDVTYKVVIKGLTTTKEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGGRLIQSTTGGSITYNDQPYSKILKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPNKLTKEEKEKRALDVIDELGLGRCQDTMIGGSYVRGISGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMDYFQFIGCTPLIAMNPAEFLLDLANGNVNDISVPSELKDKVQMGNAEAETCNGKPSASVVQEYLVEAYDSRVAEIEKTKLMVPVPLDEEVKSKVCSYKRNWGASWFEQFSILFSRGFKERRHDYFSWLRITQVLSTAVILGLLWWQSDAKNQKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRLSAYFMARTTSDLLLDLVLPVFFLLVVYFMASLRLSAGPFFLSILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHMTPTINGIRIDSGFTEVASLIAMVFGYRLLAYVSLRRMKLQAGS 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02613 741 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 145 391 IPR003439 GO:0005524
Cca03g02613 741 Pfam ABC-2 type transporter 486 695 IPR013525 GO:0016020|GO:0140359
Cca03g02613 741 MobiDBLite consensus disorder prediction 1 68 - -
Cca03g02613 741 Pfam ABC transporter 168 319 IPR003439 GO:0005524
Cca03g02613 741 Gene3D - 144 385 IPR027417 -
Cca03g02613 741 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 32 735 - -
Cca03g02613 741 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 32 735 - -
Cca03g02613 741 CDD ABCG_EPDR 142 373 - -
Cca03g02613 741 MobiDBLite consensus disorder prediction 1 18 - -
Cca03g02613 741 ProSitePatterns ABC transporters family signature. 291 305 IPR017871 GO:0005524
Cca03g02613 741 SMART AAA_5 177 368 IPR003593 -
Cca03g02613 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 385 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02613 Cca-Chr3 47502413 47510745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02613 167 420 Calmodulin-binding Proteins AT2G36910 27.132 1.94e-13 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02613 03 47502413 47510745 Cca03g02613 03 47502413 47510745 ECH
Cca03g02613 03 47502413 47510745 Cca02g00679 02 15855782 15861140 PCT