Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g02609 | ATGGAAGGCAAGACAGAAAGTCACATTTCATCAGCTGCGGCCTTTGTTGAAGGTGGGGTTCAAGACTTATGTGATGATGCTTGCAGCATATGCCTTGAGGAGTTTTCTAAGAGTGATCCTTCAACGGTCACTACATGCAAACATGAGTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATCCTTCTAGCCAGGAATTGTTTGAGGCTGTAGAACAGGAGAGAAGTTTGAGGGTTACCACATCAAGAAATGCTTCTATTTTTCATCAACTTGCCTTTGATGATTATGAATTGCAGCATTTGCGCATGAGTGTGAATGATCCTGATTTTGAAGATAGAGTAATTCAACATATAGCTACTACTGCAGCGATGAGGAGAGCAGCCCAACTTGGTCAGAGGGAAGGGCAGCGAACTCGTTCAGCTCATGGTCATCCACACTTCTCAATGTTCTCAACTCAGCCTATCGCACTTTCATTAGGTCATGATTCAGTTGCTGGAGAAAATGAACCAACTGCAATTCCCAATAGAAGTGCATCTACCCTAATAACATCAGATGGAGATGAACCATCACAACAGATCCTGCACGTTCAAACTCAAAGCCCTTCTTCAGCTTTTGGATCTACTGTCATGACAACAAATCACCAAGGAGTTTACTTTAATGATAGAGGCTCTACTGATCATTCTTCACCAACAAACCAAGATAGAGAAGGGCCATCAGAATTCCAGTCATTTTCTGATTCTCTGCGGTCCAGATTTAGTTGTTTGTCCGTAAGATACAAAGAGTCAATCTCAAAGGGTGCAAGGGGATGGAGGGAGAGGTTATTCTCTCGTAGTTCATCCATGTCAGCAGTTGGTTCAAAAACAAGGAGAGTGGTGAATACTGGAATTGATAGTGTATCCGGATTGCTGGAGTCCCCTGAAACTAGTGAAAATAATAGAGTTATGGGTACTTCTTTATCAAATCATATGGAGGGTCGTGACATGGGAGGGGTAAGCTACCAGAACAATGTTGAAGCTACTAGGGAGAACTCTTCACATGATAACAATACTCCACCTGCTTGTTCTGCTATCTCAAATTTAAATTGA | 1131 | 0.4253 | MEGKTESHISSAAAFVEGGVQDLCDDACSICLEEFSKSDPSTVTTCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPSSQELFEAVEQERSLRVTTSRNASIFHQLAFDDYELQHLRMSVNDPDFEDRVIQHIATTAAMRRAAQLGQREGQRTRSAHGHPHFSMFSTQPIALSLGHDSVAGENEPTAIPNRSASTLITSDGDEPSQQILHVQTQSPSSAFGSTVMTTNHQGVYFNDRGSTDHSSPTNQDREGPSEFQSFSDSLRSRFSCLSVRYKESISKGARGWRERLFSRSSSMSAVGSKTRRVVNTGIDSVSGLLESPETSENNRVMGTSLSNHMEGRDMGGVSYQNNVEATRENSSHDNNTPPACSAISNLN | 376 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g02609 | 376 | Pfam | Ring finger domain | 27 | 68 | IPR001841 | - | |
Cca03g02609 | 376 | MobiDBLite | consensus disorder prediction | 316 | 334 | - | - | |
Cca03g02609 | 376 | ProSiteProfiles | Zinc finger RING-type profile. | 28 | 68 | IPR001841 | - | |
Cca03g02609 | 376 | MobiDBLite | consensus disorder prediction | 231 | 259 | - | - | |
Cca03g02609 | 376 | MobiDBLite | consensus disorder prediction | 348 | 376 | - | - | |
Cca03g02609 | 376 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 77 | IPR013083 | - | |
Cca03g02609 | 376 | MobiDBLite | consensus disorder prediction | 316 | 376 | - | - | |
Cca03g02609 | 376 | SUPERFAMILY | RING/U-box | 21 | 75 | - | - | |
Cca03g02609 | 376 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHF2A | 4 | 373 | - | - | |
Cca03g02609 | 376 | SMART | ring_2 | 28 | 68 | IPR001841 | - | |
Cca03g02609 | 376 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 4 | 373 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g02609 | Cca-Chr3 | 47473507 | 47479110 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g02609 | 25 | 76 | C3H Transcription Factor Family | AT4G00335 | 44.231 | 4.00e-12 | 62.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g02609 | K19043 | - | gmx:100800419 | 560.066 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g02609 | 03 | 47473507 | 47479110 | Cca03g02609 | 03 | 47473507 | 47479110 | ECH | |
Cca03g02609 | 03 | 47473507 | 47479110 | Cca02g00673 | 02 | 15655690 | 15660374 | PCT |