Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02609 ATGGAAGGCAAGACAGAAAGTCACATTTCATCAGCTGCGGCCTTTGTTGAAGGTGGGGTTCAAGACTTATGTGATGATGCTTGCAGCATATGCCTTGAGGAGTTTTCTAAGAGTGATCCTTCAACGGTCACTACATGCAAACATGAGTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATCCTTCTAGCCAGGAATTGTTTGAGGCTGTAGAACAGGAGAGAAGTTTGAGGGTTACCACATCAAGAAATGCTTCTATTTTTCATCAACTTGCCTTTGATGATTATGAATTGCAGCATTTGCGCATGAGTGTGAATGATCCTGATTTTGAAGATAGAGTAATTCAACATATAGCTACTACTGCAGCGATGAGGAGAGCAGCCCAACTTGGTCAGAGGGAAGGGCAGCGAACTCGTTCAGCTCATGGTCATCCACACTTCTCAATGTTCTCAACTCAGCCTATCGCACTTTCATTAGGTCATGATTCAGTTGCTGGAGAAAATGAACCAACTGCAATTCCCAATAGAAGTGCATCTACCCTAATAACATCAGATGGAGATGAACCATCACAACAGATCCTGCACGTTCAAACTCAAAGCCCTTCTTCAGCTTTTGGATCTACTGTCATGACAACAAATCACCAAGGAGTTTACTTTAATGATAGAGGCTCTACTGATCATTCTTCACCAACAAACCAAGATAGAGAAGGGCCATCAGAATTCCAGTCATTTTCTGATTCTCTGCGGTCCAGATTTAGTTGTTTGTCCGTAAGATACAAAGAGTCAATCTCAAAGGGTGCAAGGGGATGGAGGGAGAGGTTATTCTCTCGTAGTTCATCCATGTCAGCAGTTGGTTCAAAAACAAGGAGAGTGGTGAATACTGGAATTGATAGTGTATCCGGATTGCTGGAGTCCCCTGAAACTAGTGAAAATAATAGAGTTATGGGTACTTCTTTATCAAATCATATGGAGGGTCGTGACATGGGAGGGGTAAGCTACCAGAACAATGTTGAAGCTACTAGGGAGAACTCTTCACATGATAACAATACTCCACCTGCTTGTTCTGCTATCTCAAATTTAAATTGA 1131 0.4253 MEGKTESHISSAAAFVEGGVQDLCDDACSICLEEFSKSDPSTVTTCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPSSQELFEAVEQERSLRVTTSRNASIFHQLAFDDYELQHLRMSVNDPDFEDRVIQHIATTAAMRRAAQLGQREGQRTRSAHGHPHFSMFSTQPIALSLGHDSVAGENEPTAIPNRSASTLITSDGDEPSQQILHVQTQSPSSAFGSTVMTTNHQGVYFNDRGSTDHSSPTNQDREGPSEFQSFSDSLRSRFSCLSVRYKESISKGARGWRERLFSRSSSMSAVGSKTRRVVNTGIDSVSGLLESPETSENNRVMGTSLSNHMEGRDMGGVSYQNNVEATRENSSHDNNTPPACSAISNLN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02609 376 Pfam Ring finger domain 27 68 IPR001841 -
Cca03g02609 376 MobiDBLite consensus disorder prediction 316 334 - -
Cca03g02609 376 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Cca03g02609 376 MobiDBLite consensus disorder prediction 231 259 - -
Cca03g02609 376 MobiDBLite consensus disorder prediction 348 376 - -
Cca03g02609 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Cca03g02609 376 MobiDBLite consensus disorder prediction 316 376 - -
Cca03g02609 376 SUPERFAMILY RING/U-box 21 75 - -
Cca03g02609 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 4 373 - -
Cca03g02609 376 SMART ring_2 28 68 IPR001841 -
Cca03g02609 376 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 4 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02609 Cca-Chr3 47473507 47479110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02609 25 76 C3H Transcription Factor Family AT4G00335 44.231 4.00e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02609 K19043 - gmx:100800419 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02609 03 47473507 47479110 Cca03g02609 03 47473507 47479110 ECH
Cca03g02609 03 47473507 47479110 Cca02g00673 02 15655690 15660374 PCT