Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02604 ATGGGAAACACTTGTGTCGGATTGAAAACCTCGTACGATGCACTGTTTCCCTATGTTCTCCCAAGTTCATCATGGTGGTTTCATCAAACGAGGGGCACAGAAACTTCTGAGGCAGTTCAAGACACGAACGCTCTAGAGAGTGTTCAAGAAAAGCCTCCACATGTAGTGAAAATTGACAAGGAGGCTAATACGTGTAGACCTTCGGAGGAACAAATAAGGCACGTGCCAAAAAAAGGTCATAAAGTTAAGAGGGTGGCAACAGCATCTACTGGTGCTGGGCTACAAGCAGAGAAAGTTCTGAAGAGAAAAAGTGGTCACCTTAAAGAGTACTATAACTTGGGACAAGAACTTGGGAAGGGAGAATATGGAAAAACATTCCTTTGCACTGAGAAAGCCACGGGGAGAAAGTACGCATGCAAGTCGATTCCGAAGGTGAAGTTGGTGACAGATGCTGACGTGGAGGATGTGAAGAGGGAGATAGAGATAATGCATCACTTGGAGGGGTGTCCTAATGTTGTATCGATCAGAGAGGCTTATGAGGACGGTGTTGCAGTTCATGTTGTGATGGAGTTGTGTGGAGGGGGTGAACTGTTTGATAGGATTGTGGAGAGGGGGCATTACACTGAGAGAAAAGCTGCTAAACTTGCAAGGACTATAGTTGGTGTTGTAGAGAGTTGTCACTCCCTTGGAGTCATGCATCGGGATCTTAAGCCTGAGAATTTTCTCTTTGTTGATGGGAGTGAAGACTCTACACTTAAGGCCATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGAAATTTTTAGGGACATGGTTGGAAGTCCTTATTACATGGCACCTGAAGTTCTACGTAGGCATTATGGTCCAGAAGCTGATTTGTGGAGTGCAGGTGTGATCATATACATTCTCTTATGCGGAGCACCTCCATTTTGGGGTGAATCGGAGCAAGAGGTATTTGAGGAAGTTTTGCATGGTGATCTTAATTTCTCTTCAGATCCTTGGTCCAATATATCTGAAAGTGCTAAAGACTTGGTTAGGAAAATGCTTGTTAAAGATCCTAGAAAACGGATAACTGCACATGAAGTTCTTCGTCACCCTTGGATTCAGGTTGAAGGAGTTGCTCCAGATAAACCTCTTGATTCTGCAGTTATGAGTCGCCTGAAGCAGGTTTCTGTAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCGGAAGAAGAAATTTCTGAATTGAAAGTAGTGTTTAAGATGATAGACACGGACAACAGTGGTCAAATTACTTTAGAAAAACTCAAGGTTGGATTGAAAATGCTTGgtgctaatctcagtgaacctgaaattttggatctaatgcaagctGCAGATGTTGATAACAGTGGCACAACTGACTATGGAGAATTTATAGCTGCAACGTTGCATTTAAACAAAGTTGACAGAGAAGATCATTTAATTACAGCTTTTTCATATTTTGATAGAAGTGGAAGTGGCTACATTACTCAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCATGGCGAATGTCTGCTTGAAGGAAATGATCAGAGAAGCTGATCAGAACAATGATGGCCGAATAGACTACAATGAATTCGTAGCTATGATGCTGAGAGGAAATGCAGATTTAGGCAAAAACGTTGTAAATAGTGGAACTGATCTTAGAATTGGATATAGGGAGGCACTATCAGTGTGTTAA 1731 0.4084 MGNTCVGLKTSYDALFPYVLPSSSWWFHQTRGTETSEAVQDTNALESVQEKPPHVVKIDKEANTCRPSEEQIRHVPKKGHKVKRVATASTGAGLQAEKVLKRKSGHLKEYYNLGQELGKGEYGKTFLCTEKATGRKYACKSIPKVKLVTDADVEDVKREIEIMHHLEGCPNVVSIREAYEDGVAVHVVMELCGGGELFDRIVERGHYTERKAAKLARTIVGVVESCHSLGVMHRDLKPENFLFVDGSEDSTLKAIDFGMSVFFKPGEIFRDMVGSPYYMAPEVLRRHYGPEADLWSAGVIIYILLCGAPPFWGESEQEVFEEVLHGDLNFSSDPWSNISESAKDLVRKMLVKDPRKRITAHEVLRHPWIQVEGVAPDKPLDSAVMSRLKQVSVMNKLKKMALRVIAENLSEEEISELKVVFKMIDTDNSGQITLEKLKVGLKMLGANLSEPEILDLMQAADVDNSGTTDYGEFIAATLHLNKVDREDHLITAFSYFDRSGSGYITQDELQKACEEFGMANVCLKEMIREADQNNDGRIDYNEFVAMMLRGNADLGKNVVNSGTDLRIGYREALSVC 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02604 576 ProSiteProfiles EF-hand calcium-binding domain profile. 484 519 IPR002048 GO:0005509
Cca03g02604 576 Pfam EF-hand domain pair 416 477 IPR002048 GO:0005509
Cca03g02604 576 Pfam EF-hand domain pair 487 547 IPR002048 GO:0005509
Cca03g02604 576 Gene3D Transferase(Phosphotransferase) domain 1 197 375 - -
Cca03g02604 576 SUPERFAMILY Protein kinase-like (PK-like) 109 370 IPR011009 -
Cca03g02604 576 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 555 - -
Cca03g02604 576 ProSiteProfiles EF-hand calcium-binding domain profile. 523 553 IPR002048 GO:0005509
Cca03g02604 576 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Cca03g02604 576 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 56 555 - -
Cca03g02604 576 ProSiteProfiles Protein kinase domain profile. 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02604 576 SMART serkin_6 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02604 576 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Cca03g02604 576 Gene3D Phosphorylase Kinase; domain 1 113 196 - -
Cca03g02604 576 CDD STKc_CAMK 111 368 - -
Cca03g02604 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Cca03g02604 576 Gene3D - 376 550 - -
Cca03g02604 576 ProSitePatterns EF-hand calcium-binding domain. 531 543 IPR018247 -
Cca03g02604 576 CDD EFh 416 476 IPR002048 GO:0005509
Cca03g02604 576 SUPERFAMILY EF-hand 408 548 IPR011992 -
Cca03g02604 576 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Cca03g02604 576 CDD EFh 492 547 IPR002048 GO:0005509
Cca03g02604 576 SMART efh_1 452 480 IPR002048 GO:0005509
Cca03g02604 576 SMART efh_1 416 444 IPR002048 GO:0005509
Cca03g02604 576 SMART efh_1 522 550 IPR002048 GO:0005509
Cca03g02604 576 SMART efh_1 488 516 IPR002048 GO:0005509
Cca03g02604 576 Pfam Protein kinase domain 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02604 Cca-Chr3 47444639 47450525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02604 46 551 EF-hand Containing Proteins AT3G10660 68.972 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca03g02604 Pkinase 1.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02604 K13412 - gmx:100814475 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02604 03 47444639 47450525 Cca02g00214 02 4376411 4389783 PCT
Cca02g00670 02 15580276 15586465 Cca03g02604 03 47444639 47450525 PCT