Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02602 ATGGTGAAAAAGGGAAACGACATTATGCAGTATAGAGAGAGGTTGGAGAAGACCCTTGCCTTATCTGATCTGACAAACAACCAGAAACTCAAAACGCTTGTCAAAAGTCAATTCCAACGTTCTTCTAAATTAGAAACTGAAGAATGTAATGAGAAAGTTGTGGAAACCAGGACAACAGAACTATGTAACTTTCTTGATATGTTGAGAAGTGCTTCCGGAGACAATAGTGGAGGATCTAGTACATCACACCCTGAATGGAAATTAAAACAGGATAATGAAGAATTTCGTGTTATGTATCGTGAAGGACCAAAAGGAACTCCCTTTCATACATTGCTAGTTGAAGGCTATGTAGATGGGCCTCTAGATGTTTCTTTATGCCTTTCATGGGAGTCGGTCCTCTACAAGAAATGGTGGCCTCAGTTTACTATTCCCAGTTTCAAAGTTCTAGTAGCAGAACGTTTGCAGAGGGTCCAGATTGGGGAACAAATATCACGAGTGAGGATGAAGGTTCCATGGCCGCTGTCTGCAAGGGAGGCTATAGTGCATTATTATCTGTTTGAGTATTTTCAAGATGACTTGGTGGTGGTTCTTTTGAAAACGGTCCCTGAGTCGAAGATCATTGATGGTTTCAACAAGGATGTAATTCCTGAAGCAAAGGATGTGGTGAGAATTGATGTGGTGGGAGGCTATGTTATGCAAAAGGTGACATCCGATAGAAGCTATTTTCGGATAATAGCAAATTTGGATTTAAAGCTGGATTTTGTACCTCCAACCCTCATAAATTTCATTTCAAGGCAGGTCATCGGCAGTGGTTTCAAACTTTATCAGAAGGCTGTGGCTTCTATTATGACGGGCAATAATAAAGATAAAGACATCAGCAAGGCCTTGGAGGACTCATTGTATGTTAGAATACGCAAAACTCTATGCAGCATTAATGGATCAAAGGCTATGGATGGGGAAGAAGAAGAACTTAAGCAAGAAACAAGCATTGTTCCTACTGAAGAACTTATTCAAAGTGAACAAGATGGGGCAAAAGATGTGTTCTGTGAGGATAACAGCAACCAATGTGCAAATAATTATAATGGGAAGACTTCAGATGCAGGTAATGAAGAAGTTGTAGATGCACATTGTGAAGAGATTGTACAAATTGGAGATGTCAACAAGGTACTTGGTGTTCCAATTGAGGAAGGTGATTCTTGGAGTGTGCTTAAGGGCAAGGGTAATGGTGAGATTGTAGATGCAGAAAATGAAGACATTGTTCAGGCCGAAAAGGGTATCAACATTATTCCAATAGATGAAGATGATACAAGGAGTGTAATTAAGGGCAAGATGAATGTATATGTACGCTCAGATGTGAGAAATGCTCTTGAAACTATAGAGAGGGTTATTTCAACTGTTCGGGAATATGGATATCATTCACTCAGTTCCACTTCACACTCTGCTAATGGAGACTCACACTGCATGGAAAAAGGTGGCACAGTTGATTCAAGTTCTGCAAAACTTATTCAAGTGTGTTTGAAAAATGAGGCACGCAGGAACAAATGGTAA 1548 0.3999 MVKKGNDIMQYRERLEKTLALSDLTNNQKLKTLVKSQFQRSSKLETEECNEKVVETRTTELCNFLDMLRSASGDNSGGSSTSHPEWKLKQDNEEFRVMYREGPKGTPFHTLLVEGYVDGPLDVSLCLSWESVLYKKWWPQFTIPSFKVLVAERLQRVQIGEQISRVRMKVPWPLSAREAIVHYYLFEYFQDDLVVVLLKTVPESKIIDGFNKDVIPEAKDVVRIDVVGGYVMQKVTSDRSYFRIIANLDLKLDFVPPTLINFISRQVIGSGFKLYQKAVASIMTGNNKDKDISKALEDSLYVRIRKTLCSINGSKAMDGEEEELKQETSIVPTEELIQSEQDGAKDVFCEDNSNQCANNYNGKTSDAGNEEVVDAHCEEIVQIGDVNKVLGVPIEEGDSWSVLKGKGNGEIVDAENEDIVQAEKGINIIPIDEDDTRSVIKGKMNVYVRSDVRNALETIERVISTVREYGYHSLSSTSHSANGDSHCMEKGGTVDSSSAKLIQVCLKNEARRNKW 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02602 515 Gene3D - 84 284 IPR023393 -
Cca03g02602 515 PANTHER START-2 DOMAIN PROTEIN 1 356 - -
Cca03g02602 515 PANTHER START-2 DOMAIN PROTEIN 361 408 - -
Cca03g02602 515 PANTHER START-2 DOMAIN PROTEIN 408 510 - -
Cca03g02602 515 SUPERFAMILY Bet v1-like 82 279 - -
Cca03g02602 515 PANTHER POLYKETIDE CYCLASE/DEHYDRASE/LIPID TRANSPORT SUPERFAMILY PROTEIN 361 408 - -
Cca03g02602 515 PANTHER POLYKETIDE CYCLASE/DEHYDRASE/LIPID TRANSPORT SUPERFAMILY PROTEIN 408 510 - -
Cca03g02602 515 PANTHER POLYKETIDE CYCLASE/DEHYDRASE/LIPID TRANSPORT SUPERFAMILY PROTEIN 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02602 Cca-Chr3 47426293 47432001 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02602 - - ccaj:109809857 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02602 03 47426293 47432001 Cca02g00666 02 15480074 15494404 PCT