Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g02597 | ATGAGCAACCCTGCAGTTAATTCCCCTGGATTCCTTGGCTCAAGCAACATCAGTGGCTATAGCTATGGCATAGGAATTTCCGTAGGGATTCTCTTGCTCATCATGACAATCACTCTAACATCCTACTTCTGCACCAGAACACGTGTCTCAACTACTGCTCCAGATACTAGGAATAGGAGGAGAAACAACCCTAATGAACTTCAACCACATCACTCTATAGTTGATGTAAGTCTAGATGAAGCAACGATTCTAAGTTATCCAACGCTTCTGTACTCTGAAGCCAAGCTCAAGAAGGGTGATTCCACTGCAACGTGTTGCTCCATATGTCTTGCGGATTACAAGGGTAGTGATGCGCTTCGAGTGCTACCTGATTGTGGCCACCAGTTCCACCTCAAGTGCATAGACCCGTGGTTGAGATTGCATCCTACTTGTCCAGTTTGCAGAACTTCTCCCATTCCAACGCCACTCTCAACTCCTCTCGCTGAAGTTGTTCCATTAGCAACCACACAGGATTCATAG | 519 | 0.4624 | MSNPAVNSPGFLGSSNISGYSYGIGISVGILLLIMTITLTSYFCTRTRVSTTAPDTRNRRRNNPNELQPHHSIVDVSLDEATILSYPTLLYSEAKLKKGDSTATCCSICLADYKGSDALRVLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLATTQDS | 172 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g02597 | 172 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - | |
Cca03g02597 | 172 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 169 | IPR045899 | - | |
Cca03g02597 | 172 | SUPERFAMILY | RING/U-box | 86 | 153 | - | - | |
Cca03g02597 | 172 | PANTHER | RING-H2 FINGER PROTEIN ATL70-LIKE | 1 | 169 | - | - | |
Cca03g02597 | 172 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
Cca03g02597 | 172 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 152 | IPR013083 | - | |
Cca03g02597 | 172 | Pfam | Ring finger domain | 106 | 148 | IPR001841 | - | |
Cca03g02597 | 172 | CDD | RING-H2_PA-TM-RING | 105 | 148 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g02597 | Cca-Chr3 | 47377910 | 47378532 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g02597 | 10 | 169 | C3H Transcription Factor Family | AT2G35910 | 60.625 | 3.33e-57 | 177 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g02597 | - | - | gmx:100811799 | 259.996 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g02597 | 03 | 47377910 | 47378532 | Cca02g00657 | 02 | 15157126 | 15158026 | PCT |