Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02597 ATGAGCAACCCTGCAGTTAATTCCCCTGGATTCCTTGGCTCAAGCAACATCAGTGGCTATAGCTATGGCATAGGAATTTCCGTAGGGATTCTCTTGCTCATCATGACAATCACTCTAACATCCTACTTCTGCACCAGAACACGTGTCTCAACTACTGCTCCAGATACTAGGAATAGGAGGAGAAACAACCCTAATGAACTTCAACCACATCACTCTATAGTTGATGTAAGTCTAGATGAAGCAACGATTCTAAGTTATCCAACGCTTCTGTACTCTGAAGCCAAGCTCAAGAAGGGTGATTCCACTGCAACGTGTTGCTCCATATGTCTTGCGGATTACAAGGGTAGTGATGCGCTTCGAGTGCTACCTGATTGTGGCCACCAGTTCCACCTCAAGTGCATAGACCCGTGGTTGAGATTGCATCCTACTTGTCCAGTTTGCAGAACTTCTCCCATTCCAACGCCACTCTCAACTCCTCTCGCTGAAGTTGTTCCATTAGCAACCACACAGGATTCATAG 519 0.4624 MSNPAVNSPGFLGSSNISGYSYGIGISVGILLLIMTITLTSYFCTRTRVSTTAPDTRNRRRNNPNELQPHHSIVDVSLDEATILSYPTLLYSEAKLKKGDSTATCCSICLADYKGSDALRVLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLATTQDS 172
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02597 172 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Cca03g02597 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 169 IPR045899 -
Cca03g02597 172 SUPERFAMILY RING/U-box 86 153 - -
Cca03g02597 172 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 1 169 - -
Cca03g02597 172 SMART ring_2 106 147 IPR001841 -
Cca03g02597 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Cca03g02597 172 Pfam Ring finger domain 106 148 IPR001841 -
Cca03g02597 172 CDD RING-H2_PA-TM-RING 105 148 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca03g02597 Cca-Chr3 47377910 47378532 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02597 10 169 C3H Transcription Factor Family AT2G35910 60.625 3.33e-57 177
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02597 - - gmx:100811799 259.996
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02597 03 47377910 47378532 Cca02g00657 02 15157126 15158026 PCT