Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02596 ATGCCTAGGAGAAAGAAAGCGGCACAAAATCTGATTGAGGATTTTGTGACAAGAAAAACTTGCTACAACAAAAGAAGGGCAAGTTTGTTGAAGAAGATGGAGGACCTTACCACTCTTTGTGCTGTAGATTCATGCGCAATCATCGATGGTCCTGGTGATGATGTCCCTACTGTGTGGCCATCTCATGACAAGGCTAGAGAGCTTCTCGACAAGTTTGAGAATGCTCCATTGACGGATCGGTGGAGAAAAAACGTTACACCACAGATTTATGTTGAGCAGAAGAATAAGAAGATTGAAAATCAACTTGCCATGCTCAAGGAGAAGAATGATGGGAAAGACATGTCAATTTTCATGCACAAAATCCACCATGATGGCAAGTCCTTGTCTGATTTTGACGCTAGTGATATATCTCGTTTACTTTGTTATGTGGAGGGGAAACTAAAGGGTGTTAGAGAGAAAACTGGCCATACTAAACATCATGAGTTGTCTCCTAATCCTCCAACACCGCCAGTTTCTTGTCCTCTAAAGAATGACATTGGTTCACAGCCCAACACAGATGAACCAGTTTTCGAACAATCAACCTTAGATTTAAAGAAAGAAGATGCTACGATGAATAATGGTGTTGATAACAATATAGGGAGCAACAACAACATGGGGCTGCCACCTCCACCACATACACATCTTGGTGATGTTGATATGGTGCTGCATCAAGATCAAGTCAATTTTGAAGGCTTCAATCATGGTGATGTTGACATGGTGTTGCCTCCAGGCAATTTTGGAGGCCTCATTGATGAAAGTGGTTCATCTGGGGTGTTGCCTCAAGGCAATTTTACAGGTCTCAATGGTAATAGTGATTCAGGGTTTTTGTATGGAAGCTATTTTGGTGAAATTGGAGGCAGTGACTTATGGCCATCTTATGGAAATTTTGGAGGCACAATTGGTAAAAGTGATATGATCCAAGGCAACATTAGTGGAACTTTCTCAGGAACAGGGCAGCATGATGAAAATCAAGGAGGGTCCATTAACAATATAGGGTTATGGGGTCATCAAAGCAACTTTGGAGCCAACAATGATGCTGTTGCTGTGGGCAGATCATCCAATTATCCAAACTTTGTGGAAGGGAGTGATATTGAATGGCCTACATTTGAAGGATTTTTTTCCTCCAAGTGA 1170 0.4171 MPRRKKAAQNLIEDFVTRKTCYNKRRASLLKKMEDLTTLCAVDSCAIIDGPGDDVPTVWPSHDKARELLDKFENAPLTDRWRKNVTPQIYVEQKNKKIENQLAMLKEKNDGKDMSIFMHKIHHDGKSLSDFDASDISRLLCYVEGKLKGVREKTGHTKHHELSPNPPTPPVSCPLKNDIGSQPNTDEPVFEQSTLDLKKEDATMNNGVDNNIGSNNNMGLPPPPHTHLGDVDMVLHQDQVNFEGFNHGDVDMVLPPGNFGGLIDESGSSGVLPQGNFTGLNGNSDSGFLYGSYFGEIGGSDLWPSYGNFGGTIGKSDMIQGNISGTFSGTGQHDENQGGSINNIGLWGHQSNFGANNDAVAVGRSSNYPNFVEGSDIEWPTFEGFFSSK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02596 389 Gene3D - 14 99 IPR036879 GO:0003677|GO:0046983
Cca03g02596 389 SUPERFAMILY SRF-like 4 94 IPR036879 GO:0003677|GO:0046983
Cca03g02596 389 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 53 IPR002100 GO:0003677|GO:0046983
Cca03g02596 389 ProSiteProfiles MADS-box domain profile. 2 48 IPR002100 GO:0003677|GO:0046983
Cca03g02596 389 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca03g02596 389 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 4 192 - -
Cca03g02596 389 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Cca03g02596 389 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 192 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02596 4 172 Type I MADS-box Gene Family AT1G65300 28.824 1.45e-22 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca03g02596 SRF-TF 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02596 - - gmx:106798339 442.195