Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02595 ATGGCGATGCAAACTGTTTATCTGAAAGAACATGAAGGAAATGCACACAATTTTGTGGGGCAGTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCGGTTCATGGGGAGTCTTGTGGTCAAATGAAACCGTTTTCATTGGAGCTGCCTAACTGCATAGACCAACTTGCTGCCACTAAGCCATCGACAAGAGGAGCTGAACAAGTTTTGGGTAAAGGACTTACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGATGCACAAAAGCTTCAAACAACCATATCACTGCAGTCATCACTTGCTGACCCCAACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTACAAAATATCCTTATACGGATCAATTTTACGGGCTGTTCTCAACCTATGCACAGCAAATTTCGGGGCGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCACGGAATCATTAGACGCCGGCAGTCCCGTGCCAAAGCTGTACTTAATCACAAATTGACTAAACGTCGCAAGCCCTACATGCACGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGCTTCTTGAACACAAGGAATTCTGTTAGTGGAAATGGTAAGAGCGGAAATGAAGTGCATAAAACAGTTGAACAATTGCATTCCGGTGGCTCTCAGAGTTCTGAATTCCTTCAATCTGAGGTTGGAACTATGAACTCATCAAAGGAGACTAATGGCAGCAGTCCAAATATTTCTGGTTCTGAAGTAACTAGCATGTATTCGCGGGGAGGCCTCGACAGCTTTTCCCTCAATCATCTTGGATCTGCTGTCCACTCTCTGGCAGACATGATCGATGGTGGGCGTGGTATGATCATACCCCCCAAATGGGTTGCAGCAGCAGGTAATTGCTGCAACCTTAAAGTTTGA 987 0.4509 MAMQTVYLKEHEGNAHNFVGQLSSAASAPWWSAFGSQSVHGESCGQMKPFSLELPNCIDQLAATKPSTRGAEQVLGKGLTTQFTIFPDDCKMSDDAQKLQTTISLQSSLADPNSRFEIGFSQPMICTKYPYTDQFYGLFSTYAQQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLNHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNSVSGNGKSGNEVHKTVEQLHSGGSQSSEFLQSEVGTMNSSKETNGSSPNISGSEVTSMYSRGGLDSFSLNHLGSAVHSLADMIDGGRGMIIPPKWVAAAGNCCNLKV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02595 328 MobiDBLite consensus disorder prediction 239 276 - -
Cca03g02595 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Cca03g02595 328 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Cca03g02595 328 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Cca03g02595 328 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 327 - -
Cca03g02595 328 Gene3D - 160 220 - -
Cca03g02595 328 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 327 IPR001289 GO:0003700|GO:0006355
Cca03g02595 328 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Cca03g02595 328 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02595 Cca-Chr3 47323748 47328627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02595 1 328 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.380 5.21e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca03g02595 CBFB_NFYA 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02595 K08064 - gmx:100527677 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02595 03 47323748 47328627 Cca02g00655 02 15027258 15032637 PCT