Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02594 ATGGCTTCTGTTTCCTCTTCCCCTATCTGCAACAAAATATACAACCTTTCCATCACCCACTCTTCCATTTCACTCACCAGCAACTTCCGCCAACGACCCATATGCCTGAAACCTCTCACTCTCAACCTCAAGTCCCAAAGTTTCAGTCTTTCCTTTCTCCCACTTCACCGGCTTCCCCCTCCTTCCGCTGCCTTTGATGGGTTGGAAGTGGCTCAAGACAGCACAGAGTCCCAACAAGAGGAACCACAACCAAACACACTAACCTTTGGAAAAGCAGAACAAGAGGAAGAGCAAAAGGTTTCGGACTCAAACGATGCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATAACGAATTCCCAATTGGCTGAGCTCTTTGGAGAAGCTGGCACTGTGGCGTCTGTTGAGATTGTGTATGATCGTGTCACGGATAGAAGCAGGGGATTTGCATTTGTTACAATGGGGAGTGTAGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCGCGCAAGTTGGTGGTAGGACTGTTAAGGTAAACTTCCCAGAGGTACCCAAAGGAGGGGAAAGATTAGTAATGGGACCAAAAATACGGAACAACTACAGAGGCTTCATAGATAGCCCTCATAAGATCTATGCTGGAAACCTTGGTTGGGGACTGACCTCACAGGGTCTTAGAGAAGCTTTTGCTGAACAGCCAGGCGTATTGAGTGCTAAGGTCATCTATGAGAGGGACAGTGGGAGATCTCGAGGTTTTGGTTTTGTTTCTTTTGAAACTGCTGAATCTGCATCAGCTGCCTTGGACGTTATGAATGGTGTGGAGGTACAAGGTCGGCCCTTGCGGTTGAATTTGGCTGAAGCGAGGACACCTTCATCTCCTCCAGTAAATGATGAAAATGCAGGAAGCAATGTTGAAAACTCAGAATTGGTGTCTAGTGCCAGAACATAA 951 0.469 MASVSSSPICNKIYNLSITHSSISLTSNFRQRPICLKPLTLNLKSQSFSLSFLPLHRLPPPSAAFDGLEVAQDSTESQQEEPQPNTLTFGKAEQEEEQKVSDSNDAGRLYVGNLPYSITNSQLAELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMFDGAQVGGRTVKVNFPEVPKGGERLVMGPKIRNNYRGFIDSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESASAALDVMNGVEVQGRPLRLNLAEARTPSSPPVNDENAGSNVENSELVSSART 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02594 316 Gene3D - 194 295 IPR012677 -
Cca03g02594 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Cca03g02594 316 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 1 298 - -
Cca03g02594 316 MobiDBLite consensus disorder prediction 71 91 - -
Cca03g02594 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Cca03g02594 316 MobiDBLite consensus disorder prediction 69 106 - -
Cca03g02594 316 SUPERFAMILY RNA-binding domain, RBD 103 184 IPR035979 GO:0003676
Cca03g02594 316 MobiDBLite consensus disorder prediction 290 316 - -
Cca03g02594 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 282 IPR000504 GO:0003723
Cca03g02594 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Cca03g02594 316 Gene3D - 66 190 IPR012677 -
Cca03g02594 316 PANTHER OS02G0815200 PROTEIN 1 298 - -
Cca03g02594 316 CDD RRM_HP0827_like 108 184 - -
Cca03g02594 316 SUPERFAMILY RNA-binding domain, RBD 207 295 IPR035979 GO:0003676
Cca03g02594 316 MobiDBLite consensus disorder prediction 288 316 - -
Cca03g02594 316 SMART rrm1_1 211 284 IPR000504 GO:0003723
Cca03g02594 316 SMART rrm1_1 108 181 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02594 Cca-Chr3 47319819 47322680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02594 94 289 Eukaryotic Initiation Factors Gene Family AT3G16380 33.500 1.61e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02594 - - gmx:100814852 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02594 03 47319819 47322680 Cca02g00129 02 2515350 2518173 PCT