Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02592 ATGAACGACTTGTTATCGGGTTTGTTCTACAAGGGAAAGCAGGAAGAAAAGGAGCAGGTGATAGAGATAACACATGGTGGGAGGGAGTTGAACAAGTTCTTGGAAGAAGTGGAGTCAGTGAAGGAAGAGGTGAAGGAGCTAGAGAGGTTCGAGCTGAGCCTGCGAGCAACCAACCAACAGGGGAAAACGCTTCACAGTCCAAAGGGCGTGAGGGAGCTTCGGTCGCGCATGGACATGGACGTGGCTCTCACACTCACCAAGGCAAAACACGTCAAGGCTCGCTTGGAGGCTCTCCACCGCGCCAACCGAGCCGCACTCTCTTTGCCCGACTGCGGACCCGGTTCCTACTCCCACCGGACCCGAACCGCTCTTGTCGGAGCCCTCACCAAGAACCTCAGACACTCCATGGAGAGTTTCAATAACCTGAGGGAGCAGATATCGTACGAGTACAGAGACACCGTGCAACGTAGATACTACGCTGTCACCGGAGAGAACCCTGATCAACAAACCATTGACCTCCTCATCTCCACGGGTGAGAGTGAAAGTTTCTTGCAGAAAGCGATCCAGCAGCAAGGGAGAGCCAGCATCATGGACACCATCCAAGAGATTCAGGAGAGGCACGGCACCATGAAAGAAATAGAGAGAAATCTACACGAGCTGCACCAACTGTTCTTGGATATGGCTGTGTTGATTCAACCCCAGGGTGAACAATTGGATGACATTGAGAGCCATGTGGCACTTGCAAATTCCTTCGTCACCAAAGGGGTGCAGCAGTTGCAAGTTAAATTGGTCAGATTAATTGGTGAGTGGCATGGCTATGATATTCATGTGGGATCTTACATCAAAACTTGGTAG 855 0.5135 MNDLLSGLFYKGKQEEKEQVIEITHGGRELNKFLEEVESVKEEVKELERFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVKLVRLIGEWHGYDIHVGSYIKTW 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02592 284 Pfam Syntaxin 32 235 IPR006011 GO:0016020
Cca03g02592 284 ProSitePatterns Syntaxin / epimorphin family signature. 206 245 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca03g02592 284 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 200 262 IPR000727 -
Cca03g02592 284 Gene3D - 30 157 - -
Cca03g02592 284 Coils Coil 30 60 - -
Cca03g02592 284 Gene3D - 197 262 - -
Cca03g02592 284 SMART SynN_4 25 151 IPR006011 GO:0016020
Cca03g02592 284 PANTHER SYNTAXIN-121 18 261 - -
Cca03g02592 284 PANTHER SYNTAXIN 18 261 IPR045242 -
Cca03g02592 284 SUPERFAMILY t-snare proteins 30 255 IPR010989 GO:0016020|GO:0016192
Cca03g02592 284 SMART tSNARE_6 195 262 IPR000727 -
Cca03g02592 284 CDD SNARE_syntaxin1-like 199 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02592 Cca-Chr3 47308770 47310109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02592 26 264 SNARE and Associated Proteins AT3G11820 63.180 7.20e-106 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02592 K08486 - gmx:100810727 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02592 03 47308770 47310109 Cca02g00651 02 14943725 14945720 PCT