Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02589 ATGGACAATGAGATTGATGTTCCTTCATTCTTCGTCTGCCCCATTTCATTAGAAATTATGAAGGATCCGGTTACTGTCTCCACCGGCATCACTTACGACCGTGAAAGCATCGAAACCTGGTTGTTCTCAAAGAAAAACACCACATGCCCCGTCACCAAACAACCCTTGTTGGATTACACCGATCTCACCCCTAACCACACTCTTCGGAGACTCATTCAAGCCTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATCCCAACTCCTAAGCCTCCGGTAAACAAAACCCAGATTTCCAAGCTTCTCAAAGACGCTTCTCATTCCCCTCTCATATGCCTCCGAAGGCTTAAATCCATCGCTTCAGGAAGCGAAACTAACAAAAGATGTATGGAAGCTTCTGGGGCCGTTGAGTTCCTTGCATCGATTGTAATGAACAACAACGTTGACTCTTCCAATCTACCACAGGCGGATCCAAGATATGGATCTGGATTCGATTTGAGAACCAGTGCAAGCGATGAAGCGTTGGGCCTGCTTCATAATCTTGGTTTATCTGAACAAGGCTTGAAGACTCTCTTAAGCTTAAAAAACGGAGAGTTCATTGAGTCTTTAACTAGGGTTATGCAGAAGGGGTTCTTTGAATCACGCGCTTACGCAGTTTTCTTGTTGAGATCGATGGCCGAAGTGGCGGATCCAGTGCAACTGTTGCATCTAAGGCAAGAACTGTTCGTGGAGCTAGTGCAAGTTTTGAAGGATCAGATTTCACTCAAGACATCAAAAGCGACCCTTCAAACCCTGATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAAAGCTGTGGAAGCAGGAACGGTTCCTGTTTTGGTTGAACTTCTTCTCGATTGCAAGGAGAGAAAGCCTTGTGAGATGATGCTGGTGCTGTTGGAGACTTTGTGCCAGTGTGCTGAAGGAAGAGCAGAACTATTGAGCCATGGAGCGGGACTTGCCATTGTGTCCAAAAAGATTCTGAGAGTTTCTACGTTGGCGAATGATAGGGCCGTTAGGATTCTTTTCTTTGTTTCCAAATTCTCTGCGACTCCACACGTTCTTCAGGAAATGCTGAAACTGGGTGTGGTGGCGAAACTGTGCTTGGTGCTTCAGGTGGACAGTGGAAACAAGGCCAAGGAAAAGGCACGAGAGATACTCAAGTTGCATGCTCGCGCGTGGAAGAATTCTCCATGCATACCAAACAATTTGCTTGGTTCATACCCGGGTTATGTGTGA 1263 0.4671 MDNEIDVPSFFVCPISLEIMKDPVTVSTGITYDRESIETWLFSKKNTTCPVTKQPLLDYTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNKTQISKLLKDASHSPLICLRRLKSIASGSETNKRCMEASGAVEFLASIVMNNNVDSSNLPQADPRYGSGFDLRTSASDEALGLLHNLGLSEQGLKTLLSLKNGEFIESLTRVMQKGFFESRAYAVFLLRSMAEVADPVQLLHLRQELFVELVQVLKDQISLKTSKATLQTLIQFSPWGRNRIKAVEAGTVPVLVELLLDCKERKPCEMMLVLLETLCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILFFVSKFSATPHVLQEMLKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWKNSPCIPNNLLGSYPGYV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02589 420 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Cca03g02589 420 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Cca03g02589 420 CDD RING-Ubox_PUB 11 54 IPR045210 -
Cca03g02589 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Cca03g02589 420 Gene3D - 99 405 IPR011989 -
Cca03g02589 420 PANTHER WDSAM1 PROTEIN 3 417 IPR045185 GO:0061630
Cca03g02589 420 SUPERFAMILY RING/U-box 4 83 - -
Cca03g02589 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 417 - -
Cca03g02589 420 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Cca03g02589 420 SUPERFAMILY ARM repeat 113 385 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02589 Cca-Chr3 47255786 47257511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02589 1 418 U-box Gene Family AT3G52450 57.763 2.23e-177 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02589 - - gmx:100811258 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02589 03 47255786 47257511 Cca03g02589 03 47255786 47257511 ECH
Cca03g02589 03 47255786 47257511 Cca02g00643 02 14600703 14602674 PCT
Cca02g00644 02 14711566 14713193 Cca03g02589 03 47255786 47257511 PCT