Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02588 ATGGATGAAATTGAAGTTCCTCAGTATTTCATGTGCCCTATATCCCTTCAAATCATGAAAGACCCAGTAACCACTACAACAGGCATCACATTCGACCGAGACAGCATTGAGCAGTGGCTATTCACCAACAATAGCACCACATGCCCAATCACCAGACACCCTCTCCCTAAAAACTCTCATCTAACCCCAAATCACACCCTTCTCCGCCTAATCCAAGCTTGGTGCACCCAAAACGGTATTCACAGCATTCCTACTCCTAAACCACCACTTGACAATCAAGTCCTGAAGCTCCTCAAAGACCTCAAGGACCCCAAGCTGCAACTAAAAAATATCAAGGAATTGAAGTTTCTAGCTTCTCAGAACGAGAGAAATAACAAGTGTTTACTACAGGCTGGTGTGCCAAAAGCCATGATCCTATTCATGTTGACCTGTTTTAGAAAAGGTCAATTTGATAAGGGTCTAGAAGAAGCCCTAAGTTTATTGCAATTGCAGCTTATTGATATGTCACAAGAGGACACAAAGCTCCTTCTAGCGGAAAACAATCAAATATTGGATTCTCTAACGTGGGTTTTGGGTTGTGAGGTGGAAAATTCACTTGCTATGAAATCCCATGCAGTGGCGTTACTCAACACAATCATGCAAAAAGCCAGCTCCGGAGTAATGGAGAGACTTAAACCTGAATTATTTGAGCGGATTGTTAAATTTTTCCGATGTGGGACTTGCCAACAACGCATCAACGCTGCTCTTCGTGTCATGTTAAGCGCTTGCCACTGGGGGAGAAACAGGATCATGATGGTGGAAAGTGGTGCAGGTTTTGAACTCGTAGAGATTGGGTTGGGGACACCTGAAAAGAGCACCACGGAACTCACAATGGAGATATTATTTTATCTGTGTTCTTGTGCTGACGGGAGAGCTGAGTTTGTGAGTCACAAAGGTGCCATTGCGTTGTTGACGGAGCGAATCTTCACGGTTTCGCAAAATGTGGATGAAAGAGCCGTGTTTATTCTTTCATTGGTGTCTAAGTTCTCGGCCACTCGTGTGGTGCTTCAGGAGATGGTGGAGGTTGGGACCGTGTCCAAGCTTTGTAGGTTGGTTCAGAGTGATCATCATGGCACGTATTTGAAAGACAAAGCAGGAAAAATACTCAAGTCTCATGCTGATGTTTGGAAATGTTCTCCTTGCATTTCTGATCGTGATCGATCCTTTTATGCGAATATGTTAAGTGAAATGCAATGTTATTCTATTCATAGCTCTATGCCAAATTAA 1266 0.4344 MDEIEVPQYFMCPISLQIMKDPVTTTTGITFDRDSIEQWLFTNNSTTCPITRHPLPKNSHLTPNHTLLRLIQAWCTQNGIHSIPTPKPPLDNQVLKLLKDLKDPKLQLKNIKELKFLASQNERNNKCLLQAGVPKAMILFMLTCFRKGQFDKGLEEALSLLQLQLIDMSQEDTKLLLAENNQILDSLTWVLGCEVENSLAMKSHAVALLNTIMQKASSGVMERLKPELFERIVKFFRCGTCQQRINAALRVMLSACHWGRNRIMMVESGAGFELVEIGLGTPEKSTTELTMEILFYLCSCADGRAEFVSHKGAIALLTERIFTVSQNVDERAVFILSLVSKFSATRVVLQEMVEVGTVSKLCRLVQSDHHGTYLKDKAGKILKSHADVWKCSPCISDRDRSFYANMLSEMQCYSIHSSMPN 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02588 421 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Cca03g02588 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Cca03g02588 421 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Cca03g02588 421 SUPERFAMILY ARM repeat 94 371 IPR016024 -
Cca03g02588 421 SUPERFAMILY RING/U-box 3 82 - -
Cca03g02588 421 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Cca03g02588 421 CDD RING-Ubox_PUB 10 52 IPR045210 -
Cca03g02588 421 PANTHER WDSAM1 PROTEIN 3 397 IPR045185 GO:0061630
Cca03g02588 421 Gene3D - 91 391 IPR011989 -
Cca03g02588 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02588 Cca-Chr3 47242095 47243587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02588 2 408 U-box Gene Family AT3G11840 39.560 2.02e-99 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02588 - - qsu:112012820 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02588 03 47242095 47243587 Cca03g02588 03 47242095 47243587 ECH