Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02586 ATGGCGACATACTTTCATGGTAACTCCGAAATCCAATCAAGTGCCGCCGACGGACTCCAAACACTCGTCCTCATGAACCCCGGCTACATCCACTACTCCGACACGCCGTCGCAGCCGCAACCCTCACACGCCGCGGGAAACCTCGTGTTTCTCAACCCCGCCGCCGTCGCCGGCAACAACAACAACTCCTTCAGCCCTCACGCGCCGCCCTCTCAGACCCAACAATTCGTTGGAATCCCTCTCCCCGCTTCCCAAGACCTCAACAACCACTCCATGCACGCGCACCACGACGTCTCGCCCATGCATGGCTTCATGCCTCGCATGCAGTACAATCACTGGAACGCGCTTGACCCCGCCTCGGCGGCGCGTGATACGTCACGCGCGCAACAGGGGCTTTCCTTGGGGCTGGGGCCGTTCCGGGAGGGTCAGGCGCCGGCCATGTCCGGCGACGACCTGCGCGTGTCCGGCGGGTCGCCGTCTTCGGCTTCTGGGGTTACCAACAACGGTGCTTCCGGCATTCAGAGTGTGCTTTTGAGCTCGAAGTACTTGAAGGCAGCGCATGAGCTTCTAGAAGAGGTTGTGAATGTTAACATTGGGATTGGCTCTGAGTTGGGAAAAAAGACCAAGGTGATGGGAGAATCATCCGCAGCTGGTAGTGGAGATGGTTCAGTTGCTGGGGATGGAAATGGCAAGCGTAGTTCTGAGTTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCTAAGTTAATCGGCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAACAGATGGAGATTGTGGTGTCTTCGTTTGAGCAAGCTGCGGGGATTGGTTCTGCGAGGACATACACTGCTCTTGCATTGCAAACAATCTCGAAGCAGTTTCGGTGTTTGAAAGATGCGATTGCAGGGCAGGTTCGTGCTGCTAATAAGAGCTTAGGAGAAGATGACTGCTTTGGAGGCAAAATAGAAGGTTCTAGGCTCAAATATGTGGACCATCATCTTCGGCAACAGAGAGCTCTCCAACAATTGGGAATGATCCAGCACAACGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCACCCATATCCCAAGGATTCGGACAAGCACATGCTCGCAAAACAAACGGGGCTAACTAGGAGCCAGGTTTCGAATTGGTTTATTAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAGGAGCATGAACAGAATGGTTCTGAGGACAAATCAAGCAAGAGCAATGAAGATTCTGGTATGAAAATGGGAGCTCCACAAGAGAAAGTTTCTAGACCACCGACATCCCCGATTGGTGGGAATGTGAGAAACCAATCAGGATTCAGCTTCATGGGGTCATCAGAGCTAGAAGGGATCGCACAAGGAAGTCCCAAGAAAGCAAGGAACCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATTAACATGGATGTGAAGCCCAATGAGGGAAGCAATGAGCAACTCTCAATGAAATTTGGAGATGAAAGGCAAGGCAGAAACGGGTCCTCCTTCATGGGAAACCAAACAAACTTCATTGGTGGCTTTGGACAGTATCCAATTGGTGATATTGGAAGGTTTGATGCAGAGCAGTTTACACCAACACCAAGGTTTACAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGACTCATTACCAGGAACACATCAAACGTTTCTCCCAAACCAAAACATTCAACTAGGAAGAAGCTTGGACATTGGTGAACCACATGAGTTTGGTGCCATAAACACTTCCTCTCCTCACTCTACAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTTACCTAA 1947 0.5054 MATYFHGNSEIQSSAADGLQTLVLMNPGYIHYSDTPSQPQPSHAAGNLVFLNPAAVAGNNNNSFSPHAPPSQTQQFVGIPLPASQDLNNHSMHAHHDVSPMHGFMPRMQYNHWNALDPASAARDTSRAQQGLSLGLGPFREGQAPAMSGDDLRVSGGSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNIGIGSELGKKTKVMGESSAAGSGDGSVAGDGNGKRSSELSTAERQEIQMKKAKLIGMLDEVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRAANKSLGEDDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHEQNGSEDKSSKSNEDSGMKMGAPQEKVSRPPTSPIGGNVRNQSGFSFMGSSELEGIAQGSPKKARNHEMMHSPNSVPSINMDVKPNEGSNEQLSMKFGDERQGRNGSSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPTPRFTGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPHEFGAINTSSPHSTAAYESISMQNPKRFAAQLLPDFVT 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02586 648 SUPERFAMILY Homeodomain-like 358 424 IPR009057 -
Cca03g02586 648 ProSiteProfiles 'Homeobox' domain profile. 354 417 IPR001356 GO:0003677
Cca03g02586 648 MobiDBLite consensus disorder prediction 464 479 - -
Cca03g02586 648 Coils Coil 241 268 - -
Cca03g02586 648 CDD homeodomain 357 418 IPR001356 GO:0003677
Cca03g02586 648 MobiDBLite consensus disorder prediction 121 168 - -
Cca03g02586 648 SMART HOX_1 357 421 IPR001356 GO:0003677
Cca03g02586 648 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 589 - -
Cca03g02586 648 MobiDBLite consensus disorder prediction 428 444 - -
Cca03g02586 648 SMART prehox3 171 309 IPR006563 -
Cca03g02586 648 MobiDBLite consensus disorder prediction 211 239 - -
Cca03g02586 648 Pfam Homeobox KN domain 374 413 IPR008422 GO:0003677|GO:0006355
Cca03g02586 648 MobiDBLite consensus disorder prediction 154 168 - -
Cca03g02586 648 Gene3D - 360 439 - -
Cca03g02586 648 Pfam Associated with HOX 176 308 IPR006563 -
Cca03g02586 648 MobiDBLite consensus disorder prediction 428 511 - -
Cca03g02586 648 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 7 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02586 Cca-Chr3 47219891 47223140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02586 1 647 Homeobox Transcription Factor Family AT2G35940 51.321 3.18e-178 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca03g02586 POX 1.7e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02586 - - gmx:100810901 1110.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02586 03 47219891 47223140 Cca03g02586 03 47219891 47223140 ECH
Cca03g02586 03 47219891 47223140 Cca02g00642 02 14565939 14569696 PCT