Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02583 ATGGGCACCTCAATACTGCTCTCCACCGTCGTCGTCCTCCTCCTCTTCCGCCCCACAGGCGGCGACCCCAACGAGGCGAAAATCCTCCGGCAATTCCGAGACGGCCTGGAGAAGCCGGAGCTGCTGCCGTGGCCAGACAGCGGCGACGAGCCATGCGGGTGGAAGTACATTTTCTGCGACAGCAACGAGAAACGAGTGAAGCAGATTCAAGCGAAAGGACTGAACCTGACGGGTCCCCTGCCGCAGAATCTGAACGAGCTGAGGAATCTGGTGAACGTGGGCCTGCAGAACAACAGGCTCAACGGCCCATTACCCTCCTTCCGCGGCCTGTCAAGCCTCAAATATGCTTTTCTGGATAACAACAACTTCGACTCCATCCCCTCCGATTTCTTCGACGGCCTTGACAGTCTCGAAGTATTGGCTTTGGACCATAATAACCTCAACGCCACCACTCGCGGCTGGACCTTACCTTCCACTCTCCAGCGCTCTACGCAGTTGACCAACCTCTCTTGCATGAGCTGCAACCTCGCCGGCCCATTACCCCCTTTTCTGGGCTCCATGAACTCCCTCTCGTTTCTCAAGCTCTCCAACAACAACCTCACCGGCGAGATTCCACCGACTCTTAACGGTTCCGCTTTGCAGGTTCTGTGGCTGAATAACCAGCAGGGTCAGGGTCTTAGTGGCAGAATCGACGTTGTGGCTACTATGGTTTCCCTTACCAGCCTCTGGCTTCATGGGAACGCCTTCACAGGCCCCATTCCGGAGAAAATTGGGGACTTGAGTTCCTTGAAGGATCTTGATCTCAACGGGAACAACCTCGTTGGGTTGCTTCCTAGTGGTTTGGCTGATATCAAACTCGACAACCTCGATTTGAATAATAATCACTTAATGGGTCCGATTCCGGATTTTAAGGCGGCTAAAGTGTCTTATGAGTTTAATAATTTTTGTGTGAGTAAACCGGGGGTTCCTTGCGCTTTTGAGGTGATGGCTTTGTTGGGGTTTCTTGGTGAGTTGAATTATCCTCAGAATTTGGTTGATTCGTGGACGGGGAATGACCCTTGTGAGGGGCATTGGTTGGGGATAAAGTGTGGTGCTGATGGGAAGGTCAATATGATAAATTTGCCTAATTTTAATCTTAGTGGTAGTTTGAGTCCTTCTGTGGCCAATTTGGGTTCTCTCGTTCAGATTAGGTTGGAGGGGAATGATATCAGTGGTGTGGTGCCTGGTAATTGGACTAGTTTGATGTCTATGAAATTGTTGGATCTGAGTGGGAATAACATTTCTCCTCCACTGCCAGTGTTTAAGAATGGGTTGAAACCTGTTGTTGTGGGGAATCCTCTGTTCAATGGTAACCAAAGTCCTTCCTCAGGGAGCAGTAACTCCTCAAATGGATCTGGGAATGTTGACCCTGCACCGGCTAACTCGAATTCGGGTTCAGGTGAATCTCATGAAACGAAGAGGTCCAAAAGGAAAGGGAGGAGAAAGGGGGACTTGCAGGCTCCAACTTCACTGGTGATTCACCCTAGGGATCCATCTGATTCGGACAGTGCTGTCAAGATTGCTGTTGCTAATAATACCAATGGAAGCATTTCCACTTTGACAGGGAGTGGCTCTGGGAGTAGGAACAGCAGTGGAATTGGGGAGTCTCATGTCATCGAAGCTGGAAATCTTAGGATATCAGTTCAGGTTCTGAGGAATGTGACCAAGAATTTTGCGCCCGAGAATGAGCttggccGCGAAAAAAAATCTGTAGTGACCAAGCTTGCTGGGACTTTTGGATATTTGGCACCAGAATATGCAGTGACAGGAAAAATCACCACCAAAGCAGATGTTTTCAGTTTTGGGGTTGTGCTAATGGAGCTTTTGACTGGATTAATGGCACTTGATGAGGATAGGCCAGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGCATATAAAATCAGATAAAAAGAAACTTATGGCTGCTATTGACCAGGCCCTTGATGTAAAGGAAGAAACATTTGAGAGCATCTCCATCATTGCCGAGCTAGCAGGGCACTGCACTGCCAGAGAACCAAGCCAACGGCCAGATATGGGTCATGCTGTGAATGTGTTGGCACCGCTTGTCGAAAAATGGAAACCCTTTGATGATGACACTGAGGAGTACTCTGGCATAGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGGTGGCAAGAGGCAGAAGGAAAGGACTTGAGCTATATGGACCTAGAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTACTGGATTTGCAGATTCTTTTACTTCAGCTGATGGTCGGTGA 2310 0.4896 MGTSILLSTVVVLLLFRPTGGDPNEAKILRQFRDGLEKPELLPWPDSGDEPCGWKYIFCDSNEKRVKQIQAKGLNLTGPLPQNLNELRNLVNVGLQNNRLNGPLPSFRGLSSLKYAFLDNNNFDSIPSDFFDGLDSLEVLALDHNNLNATTRGWTLPSTLQRSTQLTNLSCMSCNLAGPLPPFLGSMNSLSFLKLSNNNLTGEIPPTLNGSALQVLWLNNQQGQGLSGRIDVVATMVSLTSLWLHGNAFTGPIPEKIGDLSSLKDLDLNGNNLVGLLPSGLADIKLDNLDLNNNHLMGPIPDFKAAKVSYEFNNFCVSKPGVPCAFEVMALLGFLGELNYPQNLVDSWTGNDPCEGHWLGIKCGADGKVNMINLPNFNLSGSLSPSVANLGSLVQIRLEGNDISGVVPGNWTSLMSMKLLDLSGNNISPPLPVFKNGLKPVVVGNPLFNGNQSPSSGSSNSSNGSGNVDPAPANSNSGSGESHETKRSKRKGRRKGDLQAPTSLVIHPRDPSDSDSAVKIAVANNTNGSISTLTGSGSGSRNSSGIGESHVIEAGNLRISVQVLRNVTKNFAPENELGREKKSVVTKLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDQALDVKEETFESISIIAELAGHCTAREPSQRPDMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDLSYMDLEDSKSSIPARPTGFADSFTSADGR 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02583 769 SUPERFAMILY Protein kinase-like (PK-like) 583 700 IPR011009 -
Cca03g02583 769 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 581 769 - -
Cca03g02583 769 PANTHER OSJNBA0070M12.3 PROTEIN 493 579 - -
Cca03g02583 769 PANTHER OSJNBA0070M12.3 PROTEIN 581 769 - -
Cca03g02583 769 PANTHER OSJNBA0070M12.3 PROTEIN 14 491 - -
Cca03g02583 769 SMART LRR_typ_2 390 413 IPR003591 -
Cca03g02583 769 SMART LRR_typ_2 260 283 IPR003591 -
Cca03g02583 769 SMART LRR_typ_2 134 157 IPR003591 -
Cca03g02583 769 SMART LRR_typ_2 110 133 IPR003591 -
Cca03g02583 769 SMART LRR_typ_2 187 211 IPR003591 -
Cca03g02583 769 MobiDBLite consensus disorder prediction 445 515 - -
Cca03g02583 769 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 493 579 - -
Cca03g02583 769 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 14 491 - -
Cca03g02583 769 Gene3D Ribonuclease Inhibitor 22 322 IPR032675 -
Cca03g02583 769 Gene3D Transferase(Phosphotransferase) domain 1 561 719 - -
Cca03g02583 769 SUPERFAMILY L domain-like 327 435 - -
Cca03g02583 769 SUPERFAMILY L domain-like 30 303 - -
Cca03g02583 769 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Cca03g02583 769 Pfam Leucine rich repeat N-terminal domain 328 363 IPR013210 -
Cca03g02583 769 Gene3D Ribonuclease Inhibitor 326 446 IPR032675 -
Cca03g02583 769 MobiDBLite consensus disorder prediction 747 769 - -
Cca03g02583 769 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Cca03g02583 769 Pfam Leucine rich repeat 238 296 IPR001611 GO:0005515
Cca03g02583 769 MobiDBLite consensus disorder prediction 446 481 - -
Cca03g02583 769 Pfam Protein kinase domain 581 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02583 Cca-Chr3 47133788 47137319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02583 585 712 Receptor kinase-like Gene Family AT5G65700 31.538 1.26e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Cca03g02583 Pkinase 7.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02583 - - gmx:100305366 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02583 03 47133788 47137319 Cca03g02583 03 47133788 47137319 ECH
Cca03g02583 03 47133788 47137319 Cca02g00639 02 14412496 14416857 PCT