Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02573 ATGTCCGGCAAACAACCCGAGTTGAACGGAGCCTTCTACGGCCCGGCCATCCAGCCGGCGAAGTCGTACGAGCGTCCAGGGCGGGGCGGAGGGTGCGGGGGCTGCTGCGGCTGCCTCTTCAGCCTCATCTTGAAGCTGATCCTGAGCGTGGTCATCATAGTTGGCATCGCCGTGTTTCTGGTGTGGCTGATAGTCCGTCCGAACGTGGTGAAATTCCACGTGACCGACGCCACCCTCACGCAGTTCAACTACACGGGGAACACGCTCCACTACGACCTGGCCCTAAACGTGAGCGTTCGCAACCCCAACAAGAGGGTGGGGATCTACTACGACCGCATCGAGGCGCGCGCACTGTACCACGATGCGAGGTTCGACACGGAGCTACCCAGCCCCTTCTACCAGGGCCACAAGTCCACCAACGTCATCAGCACCGTCTTCAAGGGTCAACAGGTCCTGCCACTCACCGCTGACCAAACCTCCCTATTCAAGAAGGACAACGCCACCAGGGTGTACCCCATCCATGTCAAGATGTACCTCAGAGTCAGGTTCAAGTTGGGCTTGCTCAAGACCATGACTCTCAAGCCCAAAGTTTCCTGCGACTTGCAAGTGCCTTTGCAAGGAACCGCCGGGGTCTTTCAGACCACCAAGTGCGACTATGATCACTGA 666 0.5856 MSGKQPELNGAFYGPAIQPAKSYERPGRGGGCGGCCGCLFSLILKLILSVVIIVGIAVFLVWLIVRPNVVKFHVTDATLTQFNYTGNTLHYDLALNVSVRNPNKRVGIYYDRIEARALYHDARFDTELPSPFYQGHKSTNVISTVFKGQQVLPLTADQTSLFKKDNATRVYPIHVKMYLRVRFKLGLLKTMTLKPKVSCDLQVPLQGTAGVFQTTKCDYDH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02573 221 PANTHER OS05G0367900 PROTEIN 23 219 IPR044839 GO:0098542
Cca03g02573 221 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 23 219 - -
Cca03g02573 221 Pfam Late embryogenesis abundant protein 96 199 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02573 Cca-Chr3 47039747 47041017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02573 64 205 SNARE and Associated Proteins AT1G32270 40.972 1.23e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02573 - - gmx:100793187 317.39