Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02565 ATGTCTGGTTCCAGAAAGAAGCTTCTTCTCAACACCGTGTCCGTGAAACTAGGTTGCAGCAGCTTCAGAAGACCGAAGGTGTTGTGGCGCATGTTCCACCCAAAGCCAAAACCCACTTTCCAAAGCCACAAACATTTCAACCATTCATCGAGTGAGGACAAATGTGacagcaccagcaccaccaacaccaacaccaacaccaCATTCTCTCCCTACGTTGACTCCTCGCACTTTTCTGACTCAGATAATTCGTACGTGAAGAGTGTGGGGGGTTTGGGAATAGGAGGGAAAGAAGGCGTGGCAGTGGAGAAAGACTCTGATGACCCTTATCTGGATTTCAGACACTCGATGCTGCAAATGATATTGGAGAACGAGATATACTCGAAGCAAGATCTCAGAGAGCTTTTGAACTGTTTTCTGCAGCTGAATTCGCCGCATCACCATGGGGTTATTGTCAGGGCTTTCACTGAGATCTGGAATGGGGTCTTCTCCGTGAGGTCTAGTTCTCCCAGGATCAACATCAATCGTAGGCCACGTCACTACTAA 546 0.4451 MSGSRKKLLLNTVSVKLGCSSFRRPKVLWRMFHPKPKPTFQSHKHFNHSSSEDKCDSTSTTNTNTNTTFSPYVDSSHFSDSDNSYVKSVGGLGIGGKEGVAVEKDSDDPYLDFRHSMLQMILENEIYSKQDLRELLNCFLQLNSPHHHGVIVRAFTEIWNGVFSVRSSSPRININRRPRHY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02565 181 MobiDBLite consensus disorder prediction 40 66 - -
Cca03g02565 181 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 100 160 IPR006458 -
Cca03g02565 181 Pfam Transcriptional repressor, ovate 106 162 IPR006458 -
Cca03g02565 181 ProSiteProfiles OVATE domain profile. 102 161 IPR006458 -
Cca03g02565 181 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 167 IPR038933 GO:0045892
Cca03g02565 181 PANTHER TRANSCRIPTION REPRESSOR OFP6 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02565 Cca-Chr3 46970908 46972383 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca03g02565 Ovate 3.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02565 - - gmx:106797222 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02565 03 46970908 46972383 Cca03g02565 03 46970908 46972383 ECH