Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02564 ATGGGGAAGAAAATGAAGCTCCCTTCCCTCCTCAACCCCAACAAGCCTTCTTCCTCTCCCTGGCCCTGGCCCTCCTGTCACCAACCCCGAACGCTCTCCTTCAGAGCCCAAAACGACGCCGCTTTCAAAACCATCAACGCCGCATACTTAGACTCCTCCGACTCCTTCTTCACCGTAACCCCCGACTCCGGAAGTTTCTCCACCGCCTCCGAGGAAGATTCTAGAAGACCTGATTCCCCCGAAACACTCATTCGCGGCTTGCGTTCTCACCGTTTGTTCTTCGAGCCCGACCAGACAAGTTCCATATTAGAGGCCAAGacagcagcaataacaacaacaacaacGTTGCCCTTCAAAGACAGCGTTGTCTTGTCCGTTGACTCTCAAGACCCATACGTCGATTTCCGCAAGTCCATGGAGGAGATGCTGGAGGCGCAGTGCGTGAAGGACTGGGAGGGCCTCCAAGAGCTTTTGTGTTGGTATTTGAAAGTCAATGGCAAAACCAACCATGCTTATATCGTTGGCGCTTTCGTTGATttgttgttctcttcttcctcctccttttcttctaactctccttcttcCCCTTTATCGCTTTATAGCTCCTCGCTCTCTTCCTCTTGTTTGGAAGCTGAGGTTGATAATCACACACCTGCCACTTCTACTTCTTCTCTCTTGTTGCAACAAGTCAGGGAGGACGAGGCTTCATCGTCTTCTTCGTCTTTTAATTAA 732 0.4631 MGKKMKLPSLLNPNKPSSSPWPWPSCHQPRTLSFRAQNDAAFKTINAAYLDSSDSFFTVTPDSGSFSTASEEDSRRPDSPETLIRGLRSHRLFFEPDQTSSILEAKTAAITTTTTLPFKDSVVLSVDSQDPYVDFRKSMEEMLEAQCVKDWEGLQELLCWYLKVNGKTNHAYIVGAFVDLLFSSSSSFSSNSPSSPLSLYSSSLSSSCLEAEVDNHTPATSTSSLLLQQVREDEASSSSSSFN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02564 243 ProSiteProfiles OVATE domain profile. 123 183 IPR006458 -
Cca03g02564 243 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 5 213 - -
Cca03g02564 243 MobiDBLite consensus disorder prediction 215 243 - -
Cca03g02564 243 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g02564 243 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 123 182 IPR006458 -
Cca03g02564 243 Pfam Transcriptional repressor, ovate 128 182 IPR006458 -
Cca03g02564 243 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 5 213 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02564 Cca-Chr3 46944005 46945289 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca03g02564 Ovate 6.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02564 - - ccaj:109813992 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02564 03 46944005 46945289 Cca02g02694 02 48337455 48338438 ECH
Cca03g02564 03 46944005 46945289 Cca03g02564 03 46944005 46945289 ECH
Cca03g02564 03 46944005 46945289 Cca02g00615 02 13745714 13746490 PCT