Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02553 ATGTCCATAAACCAGTACTCGTGCTGGAACcagcagcagcagcagcagcagcaAGCCGCCACGTGGGTGGCCGATTCTAACAGTCCGCGTTTCAACCTGAACAaggaggaggtggtggcggcggagcaggaagaggagAAAGAAGCGATGTTCGAGAAGGCTCTGACGCCGAGCGACGTGGGGAAGCTGAACAGGCTGGTGATCCCCAAGCAGCACGCGGAGAAGCACTTCCCGCTAGAGTCGTCCTCGAAGGGCCTCTTGCTGAGTTTCGAAGACGAGTCCGGTAAGTGCTGGCGATTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGATGGAGCCGTTACGTCAAGGACAAACGCCTCAACGCTGGCGACGTCGTTTTGTTTCACAGACACCGCATCcaccctcaccgcttcttcatctcctccacccctcgccaaaccccaccctcctatcctcactctcactctcTAGGTGGAGGGTCCCAAGCCCAAGCCCAAGCCCAAGGACAGAAGGAAACCACAGCGGCTTCAAGTGGGAGGGTGCTCAGGCTGTTTGGGGTGAACATGGAATGCCAACCTCAACCTCAACCTCATCATGATTCCCAAAACTCCACCCCACAATGCTCTTACTCTTTCTCTCCATATTCTTCTTCAAACCCTCACCCTCGCCATCACATGCTACATCAACAACAACCATACTAG 720 0.4375 MSINQYSCWNQQQQQQQQAATWVADSNSPRFNLNKEEVVAAEQEEEKEAMFEKALTPSDVGKLNRLVIPKQHAEKHFPLESSSKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLNAGDVVLFHRHRIHPHRFFISSTPRQTPPSYPHSHSLGGGSQAQAQAQGQKETTAASSGRVLRLFGVNMECQPQPQPHHDSQNSTPQCSYSFSPYSSSNPHPRHHMLHQQQPY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02553 239 Coils Coil 33 53 - -
Cca03g02553 239 MobiDBLite consensus disorder prediction 145 182 - -
Cca03g02553 239 MobiDBLite consensus disorder prediction 200 239 - -
Cca03g02553 239 SMART B3_2 51 150 IPR003340 GO:0003677
Cca03g02553 239 SUPERFAMILY DNA-binding pseudobarrel domain 48 146 IPR015300 -
Cca03g02553 239 Pfam B3 DNA binding domain 51 137 IPR003340 GO:0003677
Cca03g02553 239 MobiDBLite consensus disorder prediction 146 182 - -
Cca03g02553 239 CDD B3_DNA 50 138 IPR003340 GO:0003677
Cca03g02553 239 MobiDBLite consensus disorder prediction 196 239 - -
Cca03g02553 239 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 211 IPR044800 GO:0003700
Cca03g02553 239 Gene3D - 39 156 IPR015300 -
Cca03g02553 239 ProSiteProfiles B3 DNA-binding domain profile. 51 150 IPR003340 GO:0003677
Cca03g02553 239 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 15 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02553 Cca-Chr3 46792412 46793680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02553 44 207 RAV Transcription Factor Family AT5G06250 46.667 6.00e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca03g02553 B3 5.5e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02553 - - ccaj:109813998 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02553 03 46792412 46793680 Cca03g02553 03 46792412 46793680 ECH
Cca03g02553 03 46792412 46793680 Cca02g00598 02 13258326 13260580 PCT