Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02550 ATGTCTCAGACGAAGAAACTGACGCCGAATCTGGATCAGCAGTCCACGAAGGTGCTGAATCTGACGGTGCTCCAGCGAATCGATCCATTCATCGACGAGATTCTATTCACCGCCGCGCATGTCTCTTTCTACGACTTCAACATCGAAAGCAACCAGTGGGTTCGTTCTTTCCCCcttcttttctttctcttcacttcttctcgctttcttctctcatcttcCACTTTCTCATTCCAGAGTCGTAAGGATGTTGAAGGATCTCTCTTCGTCGTCAAGAGGAATTCACAACCGCGGTTTCAGTTTATCGTAATGAATCGACGAAATACAGATAACCTAGTAGAGAATCTATTGGATTTTGAATATGAACTTAAAAATCCGTACCTATTATATCGGAATGCAGCTCAAGAAGTTAATGGTATTTGGTTTTACAATCCAGACGAATGTGAAGAAGTTGCAAATCTCTTTAACAGGATACTTAACGCGTACCCAAAGGCACCTCCTACTACAATAATGCCTGCTAACAAAAGTGAGTTTGAGGAACTTCAGCCAGTTTCAACTATACCGGAAAGCCCTCTAGAGTCATCTTCAGCTGCTTCTGCAACTGATGCTGTTGAAGATTCTGTATTTACAAACTTCTTCAGCACATCGAACATTGCTGGAAAATATGCTTCCAATGTAGAAAATTTTAGACAGCATTCTGCAACTATCACTTCTACTGCTCCTAGCAGTTTATTGTCTCCTGCACCTACCATGCAAAAAATACCATCTGCCTCTCATTCAACTTCATCTATCTCTGGCTTCCCCCTTGACTCTCTTGAAACAATCAAGAGTGGCCATCAAGTCCTTAATCTTGTTAAGCCTTCTACTTTTTTGGCATCGACTTCATCTTCACTGTTAGTTCCACCTATTTCTTCATCTGTTCCCCCTAGTGCTGTTGTTCATCATTCACTGAATCTGCCACACCAATATGGCACTCCAGTACTTCAACCTTTCCCACCCTCTAATCCTCCTCTTTCTCTTACACCTCCTATTTCGAACTCTACTCCAGATAGACCTGTTGTCAGCAGGGATAAAGTTCGTGATGCGCTTTTATCGTTGGTTCAGGATGATCAATTTATTGACATGATGTTCCAGGCATTACTGAAGaatatggcgatgcaatgcacactggaaatgaatTCGATGGCGGCCGTAAGAAAAATAATGGAGGCCAATAAAAGCTTGTCGCCATCTCTTCTATCTTTTCGTCGGGGAATTGCTTACAAGCTTTTCGTTGGAGGACTGTCCTTCTACACCACAGAGAAAGCATTATCAGAGGCCTTCTCCAATTATGGCCAAGTTATTGAAGCCAAAATTGTAACAGATAGGGTGTCAGACAGATCAAAGGGATTTGGGTTTGTGACCTTTGCTTCACAAGATGAGGCTGAGAATGCCATAGCAGAGATGAAAGGAAAGGCATTAAATGGACGTGTTATCTTTGTTGATTATGCAAAACCCAATACCAACACTGGTGGTGGAATGCCAATTGCAAGAGGACCTCCTGAACCAACACCAGATACTTGA 1563 0.405 MSQTKKLTPNLDQQSTKVLNLTVLQRIDPFIDEILFTAAHVSFYDFNIESNQWVRSFPLLFFLFTSSRFLLSSSTFSFQSRKDVEGSLFVVKRNSQPRFQFIVMNRRNTDNLVENLLDFEYELKNPYLLYRNAAQEVNGIWFYNPDECEEVANLFNRILNAYPKAPPTTIMPANKSEFEELQPVSTIPESPLESSSAASATDAVEDSVFTNFFSTSNIAGKYASNVENFRQHSATITSTAPSSLLSPAPTMQKIPSASHSTSSISGFPLDSLETIKSGHQVLNLVKPSTFLASTSSSLLVPPISSSVPPSAVVHHSLNLPHQYGTPVLQPFPPSNPPLSLTPPISNSTPDRPVVSRDKVRDALLSLVQDDQFIDMMFQALLKNMAMQCTLEMNSMAAVRKIMEANKSLSPSLLSFRRGIAYKLFVGGLSFYTTEKALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAIAEMKGKALNGRVIFVDYAKPNTNTGGGMPIARGPPEPTPDT 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02550 520 MobiDBLite consensus disorder prediction 332 352 - -
Cca03g02550 520 Pfam Dcp1-like decapping family 80 156 IPR010334 GO:0000290|GO:0008047|GO:0043085
Cca03g02550 520 Pfam Dcp1-like decapping family 17 55 IPR010334 GO:0000290|GO:0008047|GO:0043085
Cca03g02550 520 SUPERFAMILY PH domain-like 19 164 - -
Cca03g02550 520 PANTHER TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1 79 388 IPR010334 GO:0000290|GO:0008047|GO:0043085
Cca03g02550 520 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 423 492 IPR000504 GO:0003723
Cca03g02550 520 Gene3D - 71 161 IPR011993 -
Cca03g02550 520 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 421 499 IPR000504 GO:0003723
Cca03g02550 520 Gene3D - 415 514 IPR012677 -
Cca03g02550 520 PANTHER TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1 1 55 IPR010334 GO:0000290|GO:0008047|GO:0043085
Cca03g02550 520 SMART rrm1_1 422 495 IPR000504 GO:0003723
Cca03g02550 520 PANTHER MRNA-DECAPPING ENZYME-LIKE PROTEIN ISOFORM X1 1 55 - -
Cca03g02550 520 Gene3D - 5 66 IPR011993 -
Cca03g02550 520 SUPERFAMILY RNA-binding domain, RBD 421 512 IPR035979 GO:0003676
Cca03g02550 520 CDD EVH1-like_Dcp1 19 159 - -
Cca03g02550 520 PANTHER MRNA-DECAPPING ENZYME-LIKE PROTEIN ISOFORM X1 79 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02550 Cca-Chr3 46741491 46747769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02550 423 498 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 5.64e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02550 03 46741491 46747769 Cca03g02550 03 46741491 46747769 ECH