Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02544 ATGGAAAATATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAACTCATTTCGTTCTATCTCCACAATAAACTCGAAGGAGTGATAAAGGACATGAATCGAGTTATACCAGTCGTTGATATATATGCCTACAACCCCTCTCAACTCCCACAAATTTCAGGAGAGGCTAGTCTGAGAGACACGGAGCAATGGTTTTTTTTCATTCCTCGGCAAGAGAGTGAAGCTCGAGGAGGAAGACCAAAGCGTTTGACAAATAGTGGGTACTGGAAGGCTACAGGGTCTCCAAATCATGTTTTTTCTTCGGATAATCGCATCATCGGCATTAAAAGGACTATGGTTTTCTACAGTGGAAGAGCTCCTAACGGAACCAAAACCGATTGGAAGATGAATGAGTATACAGCCATCAAAGGTGAACCTTCCTCTTCAAACAAGACAGTTCCCACGTTAAGGAAGGAATTTAGTTTATGTCGAGTGTACAAAACATCAAAGTGCTTGCGGGCATTTGATCGACGACCAGCGCCAAGGAGGGACGTAGGAGGCTATTCCGGTGCTCAAAACAATGATGAAGAGCAACAAAAGGGTTCAACATCTTACGATAACCCTCATCATACGGTGGAGAGAAGAAGTGCTACAAGTTCACCTGAGACTTCATCAAACGGTGAGGAATCTACCCAAATGGATGTTGACAACGACCCTTTTCTGGATTGGGAGAAAGTGGATTTGTTCTTGGGATCAGAACCATGA 747 0.4404 MENMPPGYRFYPTEEELISFYLHNKLEGVIKDMNRVIPVVDIYAYNPSQLPQISGEASLRDTEQWFFFIPRQESEARGGRPKRLTNSGYWKATGSPNHVFSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYTAIKGEPSSSNKTVPTLRKEFSLCRVYKTSKCLRAFDRRPAPRRDVGGYSGAQNNDEEQQKGSTSYDNPHHTVERRSATSSPETSSNGEESTQMDVDNDPFLDWEKVDLFLGSEP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02544 248 MobiDBLite consensus disorder prediction 185 200 - -
Cca03g02544 248 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Cca03g02544 248 MobiDBLite consensus disorder prediction 211 227 - -
Cca03g02544 248 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Cca03g02544 248 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 240 - -
Cca03g02544 248 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 240 - -
Cca03g02544 248 Gene3D NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Cca03g02544 248 SUPERFAMILY NAC domain 2 162 IPR036093 GO:0003677|GO:0006355
Cca03g02544 248 MobiDBLite consensus disorder prediction 171 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02544 Cca-Chr3 46684469 46686208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02544 7 240 NAC Transcription Factor Family AT5G22380 50.413 4.77e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca03g02544 NAM 3.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02544 - - gmx:100777948 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02544 03 46684469 46686208 Cca03g02544 03 46684469 46686208 ECH