Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02532 ATGGATACATCAAATCCTGCGGCGTTTGTCAATGCAGAACTGTTGCATTTTTATGTTGGGAGAAGGGTTCGAGCACTGATGCAGGTTATACGGTCTGATGGTGGAATTGTAATTGGAAAATCAACTGATGAGAAGCAACTAGTTGTAAAAGGATCACCCCCACCTGCTCCTCTTACAACTTTTGTAGAAGTTTTTGGTATTGTTAATAATGATAAGTCAATTAGTCCCGAGATATGGACCAATTTTGGTGATGCCGTTGATATGTTCACCTACAATAAGCTTTGTCAGCTTGCATATGGAGAATATAAGCACTTGTTCCTGGTACGCGCGTACACAGGATTAGGTTTAGAACTTCACGATTTTGAAGCTTCCGTTTCAATTTCGACTATCGCGCGATCAGTTCCCCTGCAAGCTTGCTTTTCTAGATGCAAAAAATGCCTGGATTCTGATGAGCAGGTAGACCTTGATGGGAACAATGATCAACAGCAGACAATGgaggaagaagttgagtatgaagaagtagaggaggaggtagaagtggaagaggaagaagaggaagaggaagaggaagaggaggaagaggaggaggaggaagaagaagatgaGATGAGAGTGGCAGATACTAAGGATGGAGTTGAGAAAAAGAAACATGCTGACCTTCTTGCACTTCCACCTCATGGGTCTGAGGTTTACATTGGGGGCATTCCTCAAAATGTTTCCGAAGAAGATTTGAGGCTTTTTTGTCAATCTGTGGGAGAAGTTTCAGAGGTTAGGATAATGAAGGGAAAAGAATCCAGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATGGGCATCTAAGGCTATTGAGGAGCTGAACAACTCTGAGTTTAAGGAAAAAAGAATAAAATGCTCAACATCTCAAGCTAAGCACAAGTTGTTCATTGGTAATGTTCCTAGAAATTGGACTGAACAAGATATGAAGAAAGCTGTTGAAGAAATTGGTCCTGGAGTCATTGCTGTAGAACTGTTGAAGGACCCACAGAGTTCTGGccgtaaccgaggatttgcttttattgggtattacaatcatgcttgtgctgaatattcgaggcagaaaatgtcaaactcaaactttaaacttgacagcaacactccaacagtgagctgggctgatccaaggaattccgaatcatctgcaaactctcagGTAAAAGCACTGTATATAAAGAACCTTCCAGAAAACATTACTCAGGATCGTCTTAAAGAGCTGTTTGAACATCATGGAAATATCACAAAAGTGGTTCTCCCTCCTGCTAAAGCTGGGCAAGAAAAGAGAAGATTTGGTTTTGTGCACTTTGCTGAAAAGTCAGGTGCCATGAAGGCATTGAAGAACATGGATAAATATGAAATTGATGGACAAACATTGGATTGTTCACTTGCGAAGCCACAAGCAAATCAAAAGTCATCCGGAGCAGCCAATACACAGAATTCAGTTGCACTTCCTGCTTATCCACCTCATATTGGTTATGGTATTGTTGGAGGTGCTTATGGTGCTATAGGTCCAGGATATGGTGGTGCTGGCTTTGCACATCCACTGATGTATGGTCCTGGAGCCACCCCTGCTGGCATGGGGATGACGCCAATGCTTTTACCAGATGGAAGGATTGGATATGTATTGCAACAACCAGGGCTGCAACATCCTGCTCCAATGCCAGTATCCCGACATGGGAGGAGCGGTCGCTCAAGTGGTGGGAAACGCAGTAATGGAGCCAGCAAATTGAGTTGCACCGAAGGCTTAGAATTGTTGACGATTCGAAGCACGGAGCCTAAGTCAAATAGGACACTGCTGTGA 1845 0.368 MDTSNPAAFVNAELLHFYVGRRVRALMQVIRSDGGIVIGKSTDEKQLVVKGSPPPAPLTTFVEVFGIVNNDKSISPEIWTNFGDAVDMFTYNKLCQLAYGEYKHLFLVRAYTGLGLELHDFEASVSISTIARSVPLQACFSRCKKCLDSDEQVDLDGNNDQQQTMEEEVEYEEVEEEVEVEEEEEEEEEEEEEEEEEEEEDEMRVADTKDGVEKKKHADLLALPPHGSEVYIGGIPQNVSEEDLRLFCQSVGEVSEVRIMKGKESSEAKGYAFVTFKTKEWASKAIEELNNSEFKEKRIKCSTSQAKHKLFIGNVPRNWTEQDMKKAVEEIGPGVIAVELLKDPQSSGRNRGFAFIGYYNHACAEYSRQKMSNSNFKLDSNTPTVSWADPRNSESSANSQVKALYIKNLPENITQDRLKELFEHHGNITKVVLPPAKAGQEKRRFGFVHFAEKSGAMKALKNMDKYEIDGQTLDCSLAKPQANQKSSGAANTQNSVALPAYPPHIGYGIVGGAYGAIGPGYGGAGFAHPLMYGPGATPAGMGMTPMLLPDGRIGYVLQQPGLQHPAPMPVSRHGRSGRSSGGKRSNGASKLSCTEGLELLTIRSTEPKSNRTLL 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02532 614 Gene3D - 391 497 IPR012677 -
Cca03g02532 614 SMART rrm2_1 403 476 IPR003954 GO:0003676
Cca03g02532 614 SMART rrm2_1 229 302 IPR003954 GO:0003676
Cca03g02532 614 SMART rrm1_1 309 386 IPR000504 GO:0003723
Cca03g02532 614 SMART rrm1_1 229 302 IPR000504 GO:0003723
Cca03g02532 614 SMART rrm1_1 403 476 IPR000504 GO:0003723
Cca03g02532 614 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Cca03g02532 614 MobiDBLite consensus disorder prediction 151 211 - -
Cca03g02532 614 SUPERFAMILY RNA-binding domain, RBD 397 486 IPR035979 GO:0003676
Cca03g02532 614 Gene3D - 309 389 IPR012677 -
Cca03g02532 614 MobiDBLite consensus disorder prediction 561 592 - -
Cca03g02532 614 Coils Coil 164 209 - -
Cca03g02532 614 PANTHER - 140 587 - -
Cca03g02532 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 377 IPR000504 GO:0003723
Cca03g02532 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 300 IPR000504 GO:0003723
Cca03g02532 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 404 473 IPR000504 GO:0003723
Cca03g02532 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 402 480 IPR000504 GO:0003723
Cca03g02532 614 PANTHER GEO13361P1-RELATED 140 587 - -
Cca03g02532 614 SUPERFAMILY RNA-binding domain, RBD 225 393 IPR035979 GO:0003676
Cca03g02532 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 306 IPR000504 GO:0003723
Cca03g02532 614 CDD RPA3 6 98 - -
Cca03g02532 614 MobiDBLite consensus disorder prediction 161 204 - -
Cca03g02532 614 CDD RRM_SF 230 302 - -
Cca03g02532 614 Gene3D - 1 107 IPR012340 -
Cca03g02532 614 Pfam Replication factor A protein 3 1 99 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cca03g02532 614 Gene3D - 151 308 IPR012677 -
Cca03g02532 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 390 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02532 Cca-Chr3 46579572 46589571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02532 1 107 Core DNA Replication Machinery Family AT4G18590 63.551 2.90e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02532 K13161 - gmx:100798476 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02532 03 46579572 46589571 Cca03g02532 03 46579572 46589571 ECH
Cca03g02532 03 46579572 46589571 Cca02g01142 02 28840636 28849511 PCT