Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02523 ATGACCGACAACTGCGTTCGAAAAATGAAGGAACTTGAAGCCGTTGAATCATCAGCGGACCAAAGAATGCTTCGTTTAAGTGTAGAAACTGGTGGGTGTTCTGGATTTCAGTATGCTTTTAATTTGGATGACAGGATCAACTCAGATGACAGGGTTTTTGAGAGGGATGGAATTAAACTGGTTGTTGACAATATTTCATACGATTTTGTGAAAGGCGCAACTGTTGATTATGTTGAGGAGCTTATCCGTTCTGCTTTTGTAGTGTTTAGAGAGTCGTATCCAAGAGAGAGAAAAAATTCAGTAACCAACTGCAAGTTGGCAAGGTCTGATATTTGCTTCAACATGGTGAACTTCATTTCTCTTCTTTGTCATTTCTCTGGTCTGGTACCTATCAGTATTTTCCTTGAAAAGGGGTACAAGCGGTTTTTCAGACGGTCTATACTTGAAAGCTCTGATTTCCTCAAGAATGATTGTTTGAAAATAAACTGTACAGTTGGAGTTGTGGTTTCAGCAATTGATTGTCCACAACGTAACTCTATTAACATCCCGGAAACTGACATTGGATCACAATTTGGCACACTATTGGACAATATGGAAGGTTCGGATGTTACTTTTGATGTAGCTGGGGAGAAGTTCCCTGCTCATAAGTTGGTGTTGGCTGCTAGATCCCCAGAATTTCGATCTAAATTTTTTGGTGGTTTAGTTGAGGAAAAGAACGAGATTATTGTTACAGATTTAGAACCAAAGGTTTTTAAGGCCATGCTGCACTTTATCTACAGGGATACTCTTACAGAAGAGGTGGAAATGGGTTCATCAACCACAACTAACGATTTTCCAGTTTCCGAGACATTGACAGGAAAATTGTTAGCTGCAGCAGACAAGTATGGCTTGGGTAGGCTTAGATTGATGTGTGAATCTCGTCTTTGTAAGGACATTTCTGTGAATTCTGTAGCCAACATTTTAACCTTGGCTGATGATTGCCATGCTGCGGAGTTGAAAGCTGTTTGCCTTAAATTTGCTGCTCAAAATCTGGCAGGTATACCTAATTAG 1050 0.4 MTDNCVRKMKELEAVESSADQRMLRLSVETGGCSGFQYAFNLDDRINSDDRVFERDGIKLVVDNISYDFVKGATVDYVEELIRSAFVVFRESYPRERKNSVTNCKLARSDICFNMVNFISLLCHFSGLVPISIFLEKGYKRFFRRSILESSDFLKNDCLKINCTVGVVVSAIDCPQRNSINIPETDIGSQFGTLLDNMEGSDVTFDVAGEKFPAHKLVLAARSPEFRSKFFGGLVEEKNEIIVTDLEPKVFKAMLHFIYRDTLTEEVEMGSSTTTNDFPVSETLTGKLLAAADKYGLGRLRLMCESRLCKDISVNSVANILTLADDCHAAELKAVCLKFAAQNLAGIPN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02523 349 SUPERFAMILY TRAF domain-like 135 167 - -
Cca03g02523 349 Pfam BTB/POZ domain 193 310 IPR000210 GO:0005515
Cca03g02523 349 ProSiteProfiles BTB domain profile. 201 267 IPR000210 GO:0005515
Cca03g02523 349 TIGRFAM TIGR00049: iron-sulfur cluster assembly accessory protein 1 88 IPR016092 GO:0016226|GO:0051536
Cca03g02523 349 SUPERFAMILY POZ domain 180 312 IPR011333 -
Cca03g02523 349 Pfam Iron-sulphur cluster biosynthesis 11 86 IPR000361 -
Cca03g02523 349 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 135 347 IPR045005 GO:0016567
Cca03g02523 349 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 135 347 - -
Cca03g02523 349 SMART BTB_4 201 312 IPR000210 GO:0005515
Cca03g02523 349 CDD BTB_POZ_BPM_plant 187 309 - -
Cca03g02523 349 Gene3D Potassium Channel Kv1.1; Chain A 169 343 IPR011333 -
Cca03g02523 349 CDD MATH 138 165 IPR002083 GO:0005515
Cca03g02523 349 Gene3D - 1 98 IPR035903 -
Cca03g02523 349 SUPERFAMILY HesB-like domain 1 88 IPR035903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02523 Cca-Chr3 46506874 46509649 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca03g02523 BTB 4.2e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02523 K10523 - gmx:100806769 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02523 03 46506874 46509649 Cca03g02523 03 46506874 46509649 ECH