Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02521 ATGACGGAGTTGAAAGAGATTCAGAGACTCGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAACCCCGCCACCGGCCACGCCGGTATCCCACTCGTCTTCGCTTCTTGCAGCGGCGACAAAACCGTCCGAATCTGGGAGCAGAACCTCTCCTCTGGCCTCTGGGCTTGCAAGGCGGTTTTGGAAGAAACGCACACTCGAACTGTTCGATCTTGTGCTTGGTCACCGTCGGGGAAACTCTTGGCCACTGCAAGCTTCGATGCCACTACCGCCATTTGGGAAAATGTTGGTGGTGATTTTGAGTGTGTTTCTACTTTGGAGGGACACGAGAATGAAGTGAAGAGTGTGTGTTGGAACGCGTCTGGGACTTTGCTTGCAACTTGTAGTAGGGATAAGTCTGTTTGGATTTGGGAAGTTCTGCCTGGGAACGAGTTTGAGTGTGTGTCTGTGCTGCAAGGACACGCGCAGGATGTGAAAATGGTGAAGTGGCACCCCACGGAGGATATCTTGTTTTCGTGTAGCTATGATAATAATGTTAAGGTTTGGGCGGATGAAGGTGATAGTGACGATTGGCAGTGCATTCAAACGCTTGGGGAACCCAATAATGGTCATACTTCCACTGTTTGGGCCATCTCCTTCAATGCGAGTGGCGACAAAATGGTTACGTGTAGTGATGATCTTACCCTGAAGGTATGGGCAACAGAAAACACAGGGATGCAATCTGGTGGTGGATTTGCACCTTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCAGTTCATTGGTCAAGACAAGGTATCTTTGCCAGTGGAGCTGCTGATGATTCTATACGGCTATTTGTGGATGACGATGAAAGTCAGGTTGGTGGTCCTCTGTACAAGTTGCTGCTGAAGAAGGAGAAGGCCCACGACATGGATATAAATTGTGTGCAGTGGAGCCCTGGGGAGAAGCCGATACTAGCATCTGCAAGCGATGATGGGACAATCAAGGTGTGGGAATTGATATCATAA 1029 0.4917 MTELKEIQRLEGHTDRVWSLDWNPATGHAGIPLVFASCSGDKTVRIWEQNLSSGLWACKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVCWNASGTLLATCSRDKSVWIWEVLPGNEFECVSVLQGHAQDVKMVKWHPTEDILFSCSYDNNVKVWADEGDSDDWQCIQTLGEPNNGHTSTVWAISFNASGDKMVTCSDDLTLKVWATENTGMQSGGGFAPWRHLCTLTGYHDRTIFSVHWSRQGIFASGAADDSIRLFVDDDESQVGGPLYKLLLKKEKAHDMDINCVQWSPGEKPILASASDDGTIKVWELIS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02521 342 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 2 342 IPR028608 GO:0016226|GO:0097361
Cca03g02521 342 PRINTS G protein beta WD-40 repeat signature 35 49 IPR020472 -
Cca03g02521 342 PRINTS G protein beta WD-40 repeat signature 126 140 IPR020472 -
Cca03g02521 342 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 183 IPR001680 GO:0005515
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 140 IPR001680 GO:0005515
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 63 95 IPR001680 GO:0005515
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 10 48 - -
Cca03g02521 342 PANTHER WD40 PROTEIN CIAO1 3 341 IPR028608 GO:0016226|GO:0097361
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 342 IPR001680 GO:0005515
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 183 - -
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 63 95 - -
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 107 140 - -
Cca03g02521 342 SMART WD40_4 55 95 IPR001680 GO:0005515
Cca03g02521 342 SMART WD40_4 248 287 IPR001680 GO:0005515
Cca03g02521 342 SMART WD40_4 100 139 IPR001680 GO:0005515
Cca03g02521 342 SMART WD40_4 3 48 IPR001680 GO:0005515
Cca03g02521 342 SMART WD40_4 191 234 IPR001680 GO:0005515
Cca03g02521 342 SMART WD40_4 299 339 IPR001680 GO:0005515
Cca03g02521 342 SMART WD40_4 145 184 IPR001680 GO:0005515
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 342 - -
Cca03g02521 342 SUPERFAMILY WD40 repeat-like 4 338 IPR036322 GO:0005515
Cca03g02521 342 Pfam WD domain, G-beta repeat 102 138 IPR001680 GO:0005515
Cca03g02521 342 Pfam WD domain, G-beta repeat 192 233 IPR001680 GO:0005515
Cca03g02521 342 Pfam WD domain, G-beta repeat 147 183 IPR001680 GO:0005515
Cca03g02521 342 Pfam WD domain, G-beta repeat 307 338 IPR001680 GO:0005515
Cca03g02521 342 Pfam WD domain, G-beta repeat 6 47 IPR001680 GO:0005515
Cca03g02521 342 Pfam WD domain, G-beta repeat 250 286 IPR001680 GO:0005515
Cca03g02521 342 Pfam WD domain, G-beta repeat 58 94 IPR001680 GO:0005515
Cca03g02521 342 Gene3D - 33 342 IPR015943 GO:0005515
Cca03g02521 342 CDD WD40 6 339 - -
Cca03g02521 342 ProSitePatterns Trp-Asp (WD) repeats signature. 126 140 IPR019775 -
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 10 48 IPR001680 GO:0005515
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 233 IPR001680 GO:0005515
Cca03g02521 342 ProSitePatterns Trp-Asp (WD) repeats signature. 326 340 IPR019775 -
Cca03g02521 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 233 - -
Cca03g02521 342 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 3 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02521 Cca-Chr3 46485662 46492635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02521 78 342 U-box Gene Family AT2G33340 25.283 1.57e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02521 K24730 - gmx:100778826 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02521 03 46485662 46492635 Cca03g02521 03 46485662 46492635 ECH