Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02516 ATGGTGATTGAAGAGGGTGAGATGAATTCGCAATTAGGTGAGGTGGAGTCACGACTCCTGCAAGAAGCGAACAATCCATCATCATCGCTGGGAAGACAATCGTCCATATATTCGCTGACACTGGACGAGTTCCAGCACAGCCTATGCGAGAACGGGAAGAACTTCGGCTCCATGAACATGGACGAGTTCCTGAGCAGCATATGGAGTGCCGAAGAGAACATCTCCAACGTCCCTCCAACAACCCTAAGGGAGCAGCCAACTCTCCCTCGCCAACCTTCCCTCTCTCTGCCTCCACCTCTATGCAGAAAAACCGTCGACGAAGTCTGGTCCCACATTCAGAAGCAACAACACAACATTCAGAATACCGAGTCTGCCCCTCGCCAACCCACTTTTGGAGAGATGACTCTGGAGGATTTTTTGGTTAAGGCAGGGGTAGTTCGGGAACCATGTGTTGTACCACCAGTGACTCACTCTCACCAGCAGCAGCATTATGTAAACAATGCTGCAATGGGTCCTTCTTTTGTGAGTAACGTGGGTTATCAAGTTGGAAATGGGAAGAGAGATGGTGGTGGCGGTGGCGGGTATTGTTTTGGAGGAGGGGGGTATGGGCCTGGGCCTGGGCCTGTCAGTCCGGCTAATTCCTCAGATGGGATGGGGAATGAGAACTGTGGTGCTCAGTTTGGGCTTGACATGGGTAATTTGAGAGGGAGGAAGAGGGTGGTGGATGGTCCTGTGGAGAAGGTGGTGGAGAGAAGACAAAGGAGGATGATCAAGAATAGAGAATCTGCTGCCAGATCTAGAGCCAGAAAACAGGTACGTGCATGCATGCCTCTTTTTTATCAATGCCTACATGTATATCTTCACTAG 867 0.5063 MVIEEGEMNSQLGEVESRLLQEANNPSSSLGRQSSIYSLTLDEFQHSLCENGKNFGSMNMDEFLSSIWSAEENISNVPPTTLREQPTLPRQPSLSLPPPLCRKTVDEVWSHIQKQQHNIQNTESAPRQPTFGEMTLEDFLVKAGVVREPCVVPPVTHSHQQQHYVNNAAMGPSFVSNVGYQVGNGKRDGGGGGGYCFGGGGYGPGPGPVSPANSSDGMGNENCGAQFGLDMGNLRGRKRVVDGPVEKVVERRQRRMIKNRESAARSRARKQVRACMPLFYQCLHVYLH 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02516 288 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 17 161 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Cca03g02516 288 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 182 272 IPR043452 GO:0003700|GO:0045893
Cca03g02516 288 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700|GO:0006355
Cca03g02516 288 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 182 272 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Cca03g02516 288 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 17 161 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02516 Cca-Chr3 46456520 46458263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02516 1 272 bZIP Transcription Factor Family AT2G36270 47.120 3.35e-81 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02516 K14432 - gmx:100818567 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02516 03 46456520 46458263 Cca03g02516 03 46456520 46458263 ECH
Cca03g02516 03 46456520 46458263 Cca02g00563 02 12353823 12358497 PCT