Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02501 ATGATTCTAAACGCCCGAGGACCACCACGCCCGCCCCAACGCCACCTCTGCCTCCGTCGGCGACAGGGCCACAGAAAGAACACGGGCCTATGCGTCGTGTCCGGTTTGGGAACCGTCACCAACGTCACTCTCCGTCAACCCTCTGTCACCCCCGGCGCCATCGTCACTTTCCACGGCCGCTTTGATGTCCTCTCCCTCTCCGCCACGCTCCTCCTCCACGACTCGCCGGCAATCGCGGTCTCCGCCTTCGCCGTCTTGCTCGCCGACCCGTag 273 0.6484 MILNARGPPRPPQRHLCLRRRQGHRKNTGLCVVSGLGTVTNVTLRQPSVTPGAIVTFHGRFDVLSLSATLLLHDSPAIAVSAFAVLLADP 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02501 90 ProSiteProfiles PPC domain profile profile. 1 90 IPR005175 -
Cca03g02501 90 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 24 90 - -
Cca03g02501 90 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 90 IPR014476 GO:0003680
Cca03g02501 90 Pfam Plants and Prokaryotes Conserved (PCC) domain 25 79 IPR005175 -
Cca03g02501 90 Gene3D - 20 90 - -
Cca03g02501 90 SUPERFAMILY AF0104/ALDC/Ptd012-like 26 74 - -
Cca03g02501 90 CDD DUF296 24 76 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02501 Cca-Chr3 46296575 46296847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02501 25 71 AT-hook Motif Nuclear Localized (AHL) Family AT4G12050 57.447 1.11e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02501 - - ccaj:109810856 117.857