Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02499 ATGAAAGTTATCGCCGCGTATTTGCTCGCCGTATTAGGAGGCAACAGTGCCCCTTCCGCTGATGATTTAAGGGACATCCTCGGCTCAGttGGAGCAGATGTCAATGACGATAATATCAGTAGTTTTCTGTCTGAGGTGAAGGGAAAGGATATTGCAGAGCTTATTGCCGCCGGTAGGGAAAAGTTGCCCTCAGTGCCTTCTGGCGGTGGCGCCGTTGCCGNNNNNNNNNNNNNNNNNNNNNNNGTGCCGGGGGGGCCGCTCCTGGGGGAGGCGGCGCTGCAGCTCCGGCAGCCGTGGAATCGAAGAAGGAGGAAAAGGAGGAAGAGAAGGAGGAATCGGATGACGATATGGGGTTCGGTCTCTTTGATTAATTGGTAG 378 0.5159 MKVIAAYLLAVLGGNSAPSADDLRDILGSVGADVNDDNISSFLSEVKGKDIAELIAAGREKLPSVPSGGGAVAXXXXXXXXVPGGPLLGEAALQLRQPWNRRRRKRRKRRRNRMTIWGSVSLINW 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02499 125 CDD Ribosomal_P2 1 73 IPR044076 GO:0002182|GO:0003735|GO:0022625
Cca03g02499 125 Pfam 60s Acidic ribosomal protein 18 73 - -
Cca03g02499 125 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 2 73 - -
Cca03g02499 125 Gene3D - 1 59 IPR038716 -
Cca03g02499 125 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2 73 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02499 Cca-Chr3 46282000 46283132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02499 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 71.429 7.77e-29 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02499 K02943 - gmx:100787024 112.849