Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02492 ATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTAGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATAAAGAAAAGCCTTCTTCATTCTCCTCACTATTTCCTCCACCACCCTCTCCAACATTACCAACCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCCATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGGAAGAAGTGGCGGTGCTCGAGGGACGTGGTGGCGGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTTGTGGTGGATCTCTAGGACTAGCTGCTTCATCTTCCATTTCTTCACCGCCTCTAGCTTCTGCTTCACTCAAATCTCCTTTTGATCTGCTCCATATGAATGAACAACGTACATCTGGGACCAAGAATGAAGACAAGAGCTCTTTTGAAAGCGAAGATCATGTGGGTGGGGATGGCAGATCAGGTGGCCATATGCTGAGGCATTTCTTTGATGATTGGCCACGATCACTTCAAGACTCTGACAACGTTGAAAACAATGCTGGCAGGCTGAACTCGGCCACATGTCTATCTATTTCAATGCCCGGAAATACTTCCTCGGATGTGTCGTTGAAATTGTCCACGGGCTATGGAGAGGATCCAGGCCCAAGAAATGAGAATGTGGACCTCGAGGTGGAGGCTGACCAACTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGGCTAATCAAGTGGCTTCTATGGGAGGGCCACTTGCGGAGGCACTCAGATCATCTACTACAACTTCATCTCCCACTAGTGTTTTGCATCACGTGCCTCGTGGTTCTGGATCTGAGACCAGCTTCATTAGCACCTAA 936 0.5053 MGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSACGGSLGLAASSSISSPPLASASLKSPFDLLHMNEQRTSGTKNEDKSSFESEDHVGGDGRSGGHMLRHFFDDWPRSLQDSDNVENNAGRLNSATCLSISMPGNTSSDVSLKLSTGYGEDPGPRNENVDLEVEADQLQLNWAGGWASANQVASMGGPLAEALRSSTTTSSPTSVLHHVPRGSGSETSFIST 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02492 311 MobiDBLite consensus disorder prediction 159 184 - -
Cca03g02492 311 MobiDBLite consensus disorder prediction 158 184 - -
Cca03g02492 311 MobiDBLite consensus disorder prediction 282 311 - -
Cca03g02492 311 ProSiteProfiles WRC domain profile. 72 116 IPR014977 -
Cca03g02492 311 SMART QLQ_2 3 39 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca03g02492 311 ProSiteProfiles QLQ domain profile. 4 39 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca03g02492 311 PANTHER - 2 311 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cca03g02492 311 Pfam QLQ 5 37 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca03g02492 311 Pfam WRC 73 115 IPR014977 -
Cca03g02492 311 PANTHER GROWTH-REGULATING FACTOR 3 2 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02492 Cca-Chr3 46145006 46148665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02492 1 298 GRF Transcription Factor Family AT3G52910 53.355 5.87e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Cca03g02492 WRC 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02492 - - gmx:100814842 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02492 03 46145006 46148665 Cca03g02492 03 46145006 46148665 ECH
Cca03g02492 03 46145006 46148665 Cca02g00526 02 11346765 11349014 PCT