Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02488 ATGATGGCTGAGAAGCACTTACACGAGCTACTAAAGGAGGAGCAAGAGCCGTTCGTTCTGAACAAGTACATTTCCGAAAGGAGAAGCGAGATGAAAAGGGCTTCCCCAAAGACAAGTTTGCAAGTGAAGAAACGCAAGTCAAGCGCCAACCTCTGCAGAAGCGCTTGTCTTTTTTCCTTCACAGACACCCCAGACCTCAGAAAATCTCCGCTATTCGAATTTGCTTCCCCGGCCAAAAGCCCCTGCAAATTTATCATCCCTTCTAGAACCGCCGCTTTGCTTCTAGAAGCCGCCATGAGGATCCACAAGCACTCTTCCCGCCCCAAACCCAAGTCCCACTCCTTGGGCCTCTTCGGCTCCCTTTACAAGAGACTCACGCAACGCACCCATCCCCGGAACAAGGAAATAGAGGCTCCAGGCGTTAAGCTCTCGGTCAAGGATATTTTGAGGTGGGACAAGGATTCCTCTCTTCGAAGAAGAACAAACCTCTCCAATGCTTACGCCACTAGTACTGCTGTTTGCTCACAGACCAATCAAGATAAATCTCTTCACATGGAAACCTCAAGCAGTGGATACTCCCAACAGATTCATTTCATAACCAATCACAAACACTCTACCTTCTTCTGCCAAACCCCTTTCCGTTTTGTTCTTCAAACCACTTCTCCTTCCTCCGCCCACCACACGCCGGAGCTTCGCTCGCCCACCCGCCACGCAACACAGGACAAAGAAAGTAATGAAGGTGAGAGGGTGAGCAAATTGGAATCAGGGGAAGAAGAGGAGGAAGATAAAGAACAGTGCAGTCCAGTGTGCGTGTTAGACCCACCCTTCGAGGACGATGACGAAGGGCATGGAAACGGGGAGGAGGAAGAAGGTGGTTTTGATTTGGAGTGCAGCTATGCCATTGTACAGAGAGCCAAGCAGCAGTTATTGTACAAGCTTCGTAGATTTGAGAAACTGGCAGAGTTGGATCCAGTAGAACTTGAGAAAAGAATGCAGGACCATGAAGAGGACGAGGATGAAATATTTCTGGAACAAGAAGATGATGAAGATGGGGATAACCAAGAAACATTATGTAAAGAAAATGACTTTAGAGATCTAATTTCCCAAGCTCTGTGGCAGTCGAGCGTCCATGACAGACAGCAAATCCCAGAGGACTTTAAGAAGCTGGTTTCTGATCTCATTATAGAAGAAGAGAGGGAACTTCATTCCTTGGAAGATAGGGACATGGTGATAAGACGTATAAGCAAGAGGTTTGAATTGTGGAAAGAAGTGGAGTCTAACACGATTGATATGATGATAGAAGACGACTTCGCTAGAGAGGATGGTGGGTGGAAGAAAAATATAGAGCAGATAAGAAACATGGCCGGGGAACTTGAACTTGCCATCTTTGGCTTTCTGGTGGAGGAATTTTCGGAGGAACTAGTATGTTAA 1431 0.4696 MMAEKHLHELLKEEQEPFVLNKYISERRSEMKRASPKTSLQVKKRKSSANLCRSACLFSFTDTPDLRKSPLFEFASPAKSPCKFIIPSRTAALLLEAAMRIHKHSSRPKPKSHSLGLFGSLYKRLTQRTHPRNKEIEAPGVKLSVKDILRWDKDSSLRRRTNLSNAYATSTAVCSQTNQDKSLHMETSSSGYSQQIHFITNHKHSTFFCQTPFRFVLQTTSPSSAHHTPELRSPTRHATQDKESNEGERVSKLESGEEEEEDKEQCSPVCVLDPPFEDDDEGHGNGEEEEGGFDLECSYAIVQRAKQQLLYKLRRFEKLAELDPVELEKRMQDHEEDEDEIFLEQEDDEDGDNQETLCKENDFRDLISQALWQSSVHDRQQIPEDFKKLVSDLIIEEERELHSLEDRDMVIRRISKRFELWKEVESNTIDMMIEDDFAREDGGWKKNIEQIRNMAGELELAIFGFLVEEFSEELVC 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02488 476 MobiDBLite consensus disorder prediction 220 291 - -
Cca03g02488 476 Coils Coil 387 407 - -
Cca03g02488 476 MobiDBLite consensus disorder prediction 331 353 - -
Cca03g02488 476 MobiDBLite consensus disorder prediction 337 353 - -
Cca03g02488 476 PANTHER OS04G0572500 PROTEIN 1 476 - -
Cca03g02488 476 MobiDBLite consensus disorder prediction 230 256 - -
Cca03g02488 476 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1B-LIKE PROTEIN 1 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02488 Cca-Chr3 46098099 46101758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02488 4 475 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 33.988 7.98e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02488 - - gmx:100814311 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02488 03 46098099 46101758 Cca03g02488 03 46098099 46101758 ECH
Cca03g02488 03 46098099 46101758 Cca02g00525 02 11294471 11298198 PCT