Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02484 ATGGTGAAAACGCTCTCCAACTCCAACCCAGTTATCCAAAGCTGTCTTACACCCCAATCCTTCACACACCGTAGTTCAGCAACAACTGGTTTGCACTTCCATCTCACAACTCCTTCTCCAGCCATCCCAATTCTGAACCCAATAAATGGCTTCCCTCAACTGTCAACTGCCATCACCAAGCACCTTCACCTTCCAAAATTTCCTCATACAACCAACATGCGTTCCAGCAACACTTGCGCTGCTTCCTCCAGCAGATCCTCCAACGGTAACACAGGGCGCCACCCTGTGTACCGTGGAGTGAGGCGTAGGAGTAGTGGCAAATGGGTTTCAGAAATCCGCGAGCCCAAAAAACCCAACAGAATTTGGTTAGGGACGTTTGCCACCCCTGAAATGGCCGCTATTGCCTATGATGTCGCAGCCCTTGCCCTTAAGGGTAAGGATGCCGAACTCAACTTCCCTAACTCGGCCTCTTCTCTTCCTGTTCCTGCATCATCCGCTCCTCGTGACATTCAGATGGCTGCGGCTAGTGCTGCAGCCGCTGTTGGAGCAGCGAATGATGCACTACTGGAAGGAAGCTGGGGAGGGGACGCTTCGGCTTCATTTGCACAGGACTTTTCTGGGGGAAATTTAAACCACTTTGTGGATGAGGATTTGATCTTTGATATGCCGAATATTTTGGTCAATATGGCTGAGGGAATGCTACTCAGCCCTCCTCGTTTTGACATTGCTACTACCGACTATGAATACATGGATGAAGATCCCAACCTCTGGGGGTTCCCTTATTAA 786 0.5013 MVKTLSNSNPVIQSCLTPQSFTHRSSATTGLHFHLTTPSPAIPILNPINGFPQLSTAITKHLHLPKFPHTTNMRSSNTCAASSSRSSNGNTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSAPRDIQMAAASAAAAVGAANDALLEGSWGGDASASFAQDFSGGNLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFDIATTDYEYMDEDPNLWGFPY 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02484 261 MobiDBLite consensus disorder prediction 69 93 - -
Cca03g02484 261 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Cca03g02484 261 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Cca03g02484 261 PRINTS Ethylene responsive element binding protein signature 135 155 IPR001471 GO:0003700|GO:0006355
Cca03g02484 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 74 260 - -
Cca03g02484 261 Gene3D AP2/ERF domain 96 154 IPR036955 GO:0003700|GO:0006355
Cca03g02484 261 MobiDBLite consensus disorder prediction 69 97 - -
Cca03g02484 261 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Cca03g02484 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 74 260 - -
Cca03g02484 261 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
Cca03g02484 261 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
Cca03g02484 261 SUPERFAMILY DNA-binding domain 96 155 IPR016177 GO:0003677
Cca03g02484 261 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02484 Cca-Chr3 46058812 46059998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02484 86 260 AP2-EREBP Transcription Factor Family AT2G36450 64.088 2.30e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g02484 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02484 - - gmx:100799620 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02484 03 46058812 46059998 Cca03g02484 03 46058812 46059998 ECH
Cca03g02484 03 46058812 46059998 Cca02g00522 02 11226797 11227707 PCT
Cca02g00523 02 11271344 11272236 Cca03g02484 03 46058812 46059998 PCT