Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02483 ATGGAAATGGAGGACcatcatcatcatcaccatcatcatgagcagcagcagcaacaGTATGGCATCACTGATCTGAGGCAACTCTCGAGCCATTTCCCCTCCATGCCGCCGCAGCCCACGGCGGAGCTCTTCCCCGCCGGCCACCCCAACCTGGCGGCGACGCAGCACTACGAGATGATGATGTTTGGTCGTCAAGTGGCGGATATAATGCCTCGTTGTCTTCATGACTTTGCGTCCACCGATTCCGCCACTAACACCACCATCGCTGTTGCTACTCCCACCACCACTAGTGCTTCCACTCCTCCTCTTAGTTGCTTAGAGGCTGAAACCGCAGGATGCATCGCTGGAGACGCATCCACCGGAAGATGGCCCCGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAGGGCCCCCTTTGGGATGAGGTTTCTAGGATCATGTCTGAAGAACATGGATACCAAAGGAGTGGGAAGAAGTGCAGGGAGAAGTTTGAGAACCTTTACAAATATTACAAGAAGACAAAGGAGGGAAAGGCAGGAAGACAGGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAGCCTCGGTGCCAGAAACCAATTTTGGAAGTAGCAGCCTTCGTTTCCACACAAGCAGCCACACTAACCCTTCTCAAACAAATCAAGAAATGTTTCAGTCTCAGAAGCATTGTGATAGCCTCAGTCTCACCAACTCCACTGACTTGGACACGTCATCATCGGATGACAATGATCAAAACAGCACTGGGGGACTCAAGGACAATGACTCCATGGAGAAGAGGAGAAAGAGGGTGAGTGGAAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAAAAAACTGGTGGAGAAGCAAGAGGAGTGGTTGGATAAACTCACAAAGACACTGGAACAGAAGGAAAAGGAGAGGGTATTAAGGGAAGAAGAGTGGAGGAGACAAGAAGCTGCAAGGTTGGAGAGGGAACACAAATTTTGGGCCAAAGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTGATGGAGGCTTTGCAAAAATTAACAGGAAATGAGATAAAGAGTACTCAATCTCCTGAGGGTCTAATGGTAACTGGAATTCAAAACCACAGTGAGAACCAGAATGAAGATGGAAGTGAAATACTAAATAGCACTATTGCAAGAGGTGCTGAGAGCTGGCCAGAATCTGAGATTACAAGGCTTCAACAGTTGAGAGCTGAGATGGAGACAAGGTACATCCAAAATGGGTGCTCAGAAGAGGTTATGTGGGAGGAAATAGCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTGGTGTTCAAGGAGAAATGGGAAACTATGAGCAGCTATGCCAAGGATGGAAACAAGAAGCGCAAGGAAAACTCAAGAGGTTGTTTTTTCTTCGATAACAGTGACCAGTCTTCTCTGTATAACCAAGGAGGTTCCTATTGTGATATCAATGATCAAAGGCACGAGACTGGGAGGATGCAAACAAATGATGGTTCTTCACCTTCGAATTCAAATGTTGGGAATGCAGTTGCGGGTGATAACTGCTTTCCCTTCTTGATGGCTGAGGGTGGAAATTTGTGGGAGAACTATAGCTTAAAGGTTAATAAAGCAAACCAAAACCAGTGA 1728 0.4543 MEMEDHHHHHHHHEQQQQQYGITDLRQLSSHFPSMPPQPTAELFPAGHPNLAATQHYEMMMFGRQVADIMPRCLHDFASTDSATNTTIAVATPTTTSASTPPLSCLEAETAGCIAGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQASVPETNFGSSSLRFHTSSHTNPSQTNQEMFQSQKHCDSLSLTNSTDLDTSSSDDNDQNSTGGLKDNDSMEKRRKRVSGRSWKVKIKDFIDSQMKKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQEAARLEREHKFWAKERAWIEARDAALMEALQKLTGNEIKSTQSPEGLMVTGIQNHSENQNEDGSEILNSTIARGAESWPESEITRLQQLRAEMETRYIQNGCSEEVMWEEIATKMACFGYERSALVFKEKWETMSSYAKDGNKKRKENSRGCFFFDNSDQSSLYNQGGSYCDINDQRHETGRMQTNDGSSPSNSNVGNAVAGDNCFPFLMAEGGNLWENYSLKVNKANQNQ 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02483 575 SMART sant 418 481 IPR001005 -
Cca03g02483 575 SMART sant 119 182 IPR001005 -
Cca03g02483 575 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g02483 575 Gene3D - 422 483 - -
Cca03g02483 575 Gene3D - 123 185 - -
Cca03g02483 575 ProSiteProfiles Myb-like domain profile. 115 180 IPR001005 -
Cca03g02483 575 Coils Coil 313 340 - -
Cca03g02483 575 CDD GT1 422 484 - -
Cca03g02483 575 Pfam Myb/SANT-like DNA-binding domain 122 208 IPR044822 -
Cca03g02483 575 Pfam Myb/SANT-like DNA-binding domain 421 504 IPR044822 -
Cca03g02483 575 MobiDBLite consensus disorder prediction 213 280 - -
Cca03g02483 575 MobiDBLite consensus disorder prediction 213 292 - -
Cca03g02483 575 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 25 566 - -
Cca03g02483 575 CDD GT1 122 187 - -
Cca03g02483 575 PANTHER - 25 566 - -
Cca03g02483 575 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02483 Cca-Chr3 46033030 46036399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02483 14 570 Trihelix Transcription Factor Family AT5G03680 45.813 8.88e-146 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca03g02483 Myb_DNA-bind_4 8.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02483 - - gmx:100813245 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02483 03 46033030 46036399 Cca03g02483 03 46033030 46036399 ECH
Cca03g02483 03 46033030 46036399 Cca02g00520 02 11126224 11129487 PCT