Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02478 ATGAAACATTTATTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAACTTGGCTTTGCACCTGCGGTCAATGGCTCAGCTTCAGTTTCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGGCCACCTCATAGTATCCATGTGAATCCCAAATATTTAGAAAGGCAGCGTCTTCAGCAATCAAGTAGGAGTAAAGGAGGAGTTAATGATATGACTGGAGCTATTTTAAATTCAAATGAGGATTCAGAGAGGCCAGATAGGGCTTTGGGTGCTTCACGTCCGTGGCTGGATCCTAGGATTAACATGCAGAATAATCAGCACATTCATAGAGATGCATTTAATGATTCTGTTCCTGAAAAGAACTTTGGTGGATCATATGGGGGCAGTGAATACAGTTCTGGCATTTCAAGTAATTTGGTTTCAGTGGCTGGAAGAACTGCAAGTAGGCTTGTTGATTTAGGACATGACAAAACATGGTTCAAAACAGGTGGTGATGATGCAGAGATCATATCTGGGCAAAGAAATGGTATCAGTCTGAAGCGTAGTTTTTCAAATCATGATGCACCAAAGTCCATGAATTTGGATCCACATCGTCAGCCAAGACCAAACTTAATGCCAGGTAATTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGATTGATCATGGTCCCAATGTCTCAAGCAATTTGAGCAGAGACTCATGGATGGCCGAAGATGAAAATTTGGAAGGTGAAGACCACCACCAAATCACTCGCCATTTTAAGAAACAAATACCTGGTTTTGGGGGCCATCCACCATCATCATGGCAATTGCAGAAGCACCACCCAGTTGATAAGCTGAATCTGAAGCCAGGTTATTCAGAAGCATTTGTGTCTACTCTTGGTGGTTTACCAGCCAACGCAAGTTCGTTGGCTGTCAAGAAGGTGAACCAGTCTTTTATGCCGAATGCAGTAGTAGGAATGGCCAAAATTGCAGGACAACAATCTGATTCTGGGGAAACTGAATCCCCTTCTGGCCAGTCACCTTTGCGACAACAGTCTCCATCATTGCCAGGAACAGTACACCACCCTCATTCAATGCAAAATTTGGTTGAGCAAGAAATGCCGCAGAATCTCAAAACAACTCAATTTTTGGGAGGTCCGAGAAGTCAACATATTAGAGATCCCTCTCCTACCCATCGGCCCATTGTTCAGGTTAGTAACTTGCGAAGATCACAGGAAAAGGACATGCAGGGCCCATTATCTTCTGTAACATCTTTCCGACCAAAGCTTCAGCAACAGAAGCTGGACCCTTCTCAGACTGTTACTGCTAAAACTAAGCTGCCCCAATCTAAAATTTCTTTAGCCAGAGAAACATCAGAACAGTTGACCCCAATTAATTTGCCAGCTGCAGCTATCAAGAGTGGAATCAACCCCAAAAAATCAATTACCAGTAATCTGGATCCAAGGAATCTTCCATCTCAGTCTGGGGTTCAGCCTACTCGGGCTGGTAGGTCTTCTACCACGCTAATTTCTTCAGGGTCTGCAGTTGCATCACCATCTTCATTAGATCCTCGGCATAATGATTCATCCACACTGCCAAAAAAACCTCAAGTAAAGGCTGGACAACCACCACGAAGGCTTTCTACTCAACCACCCGCTTCCTCTAATGTGAGCAGTTCCTCAGCCCTGAGCTTAAATGCTACCAATAACTTAAATCCGATTACAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACAGAATCGCCAAATATGGTACCAAGTGAGGTGCCGATGGGATCCAAAGATCAAACTGAAAACATTACCACTAGTTGCTCTTCACCAGTTACAACAGTTTCTGGTTCTGTAGCTGTCCCAGTATCATCTTCCAGAGATGAGGTAGACTCTGCTTCAAAGACCTCTCTTTTGTTACCTCAATCAACTAGCACGGAAATCAGAAATCTCATTGGCTTTGATTTTAGACCCAATGTAATTCGAGATTTCCATCCACCTGTAATTAGCGAATTATTGGATGATTTCCCTCATCATTGCCAAGTTTGCGGTATTAGGCTTAAACTAGAAGAACAGTTTAATAGACACTTGGAGTGGCATGCCACAAGAGAACATGGTCTAACTAATGCTTCAAGAAGTTGGTACCCAAAGTCAAGTGATTGGATTGCTGGCAAGGCAGAATATTCATCCGATCTTGAATTTACCGACTCTGTTGATGTGCATGACCAAAAAACAGACAGCAGTCAACTGGATACGATGATTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTCTACTGTCAGGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTACACAGATATCAATAGTGAGATGGAAAGTATAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATTGCCGCCAATTTGGATAATGATTGA 2523 0.4308 MKHLFGTWKGVFPPQCLQMIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGGVNDMTGAILNSNEDSERPDRALGASRPWLDPRINMQNNQHIHRDAFNDSVPEKNFGGSYGGSEYSSGISSNLVSVAGRTASRLVDLGHDKTWFKTGGDDAEIISGQRNGISLKRSFSNHDAPKSMNLDPHRQPRPNLMPGNWKNSEEEEFTWDEMNSGLIDHGPNVSSNLSRDSWMAEDENLEGEDHHQITRHFKKQIPGFGGHPPSSWQLQKHHPVDKLNLKPGYSEAFVSTLGGLPANASSLAVKKVNQSFMPNAVVGMAKIAGQQSDSGETESPSGQSPLRQQSPSLPGTVHHPHSMQNLVEQEMPQNLKTTQFLGGPRSQHIRDPSPTHRPIVQVSNLRRSQEKDMQGPLSSVTSFRPKLQQQKLDPSQTVTAKTKLPQSKISLARETSEQLTPINLPAAAIKSGINPKKSITSNLDPRNLPSQSGVQPTRAGRSSTTLISSGSAVASPSSLDPRHNDSSTLPKKPQVKAGQPPRRLSTQPPASSNVSSSSALSLNATNNLNPITNLLSSLVAKGLISAETESPNMVPSEVPMGSKDQTENITTSCSSPVTTVSGSVAVPVSSSRDEVDSASKTSLLLPQSTSTEIRNLIGFDFRPNVIRDFHPPVISELLDDFPHHCQVCGIRLKLEEQFNRHLEWHATREHGLTNASRSWYPKSSDWIAGKAEYSSDLEFTDSVDVHDQKTDSSQLDTMIVADENQCLCVLCGELFEDVYCQERNEWMFKGAVYMNYTDINSEMESINVGPIIHAKCLSENSIAANLDND 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02478 840 ProSitePatterns Zinc finger C2H2 type domain signature. 696 716 IPR013087 -
Cca03g02478 840 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 837 - -
Cca03g02478 840 MobiDBLite consensus disorder prediction 602 627 - -
Cca03g02478 840 MobiDBLite consensus disorder prediction 486 544 - -
Cca03g02478 840 MobiDBLite consensus disorder prediction 408 463 - -
Cca03g02478 840 MobiDBLite consensus disorder prediction 486 569 - -
Cca03g02478 840 MobiDBLite consensus disorder prediction 551 569 - -
Cca03g02478 840 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 837 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Cca03g02478 840 MobiDBLite consensus disorder prediction 341 371 - -
Cca03g02478 840 MobiDBLite consensus disorder prediction 610 627 - -
Cca03g02478 840 MobiDBLite consensus disorder prediction 65 105 - -
Cca03g02478 840 MobiDBLite consensus disorder prediction 192 216 - -
Cca03g02478 840 MobiDBLite consensus disorder prediction 65 86 - -
Cca03g02478 840 MobiDBLite consensus disorder prediction 389 463 - -
Cca03g02478 840 MobiDBLite consensus disorder prediction 340 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02478 Cca-Chr3 45957561 45963953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02478 668 830 C2H2 Transcription Factor Family AT4G04885 35.882 4.75e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02478 K14400 - gmx:100788958 1291.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02478 03 45957561 45963953 Cca03g02478 03 45957561 45963953 ECH