Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02477 ATGGAGAGTACGCGCAGATCCTTGGACAGATCGAGAGAACCGGGTCCCAAGAAGCCAAGATTGATCGACGAACTCAGCTCACGACAGTTACCTCAACGCCAACAAGGGTCTGGGGCAGTTGCCACGTTGGCGTCTGCGAGATTTCGAACCAATGACAGAGACTCAGAAAACAGCGATTTGGGTCGTGGCGGTGGCGTTGGCGGCTACCACCCTCAGCCTCCGCCACACCAGGAACTTGTGGCTCAGTACAGGACCGCTCTTGCTGAGCTAACTTTCAATTCGAAGCCCATAATTACCAATTTGACTATTATTGCCGGAGAGAATCAATCTGCTGCCAAGGCAATTGCTGCAATTGTTTGTGCTAACATTCTAGAGGTTCCAAGTGACCAAAAACTGCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATCGGGTGGGATTATATAAAATATTTTGCTGCCAGACTGCCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTTCTGTCCATTCAAGTATGAGACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAATCCCTTCAGATGATTGAGAAGGAACTTGGCTTTGCACCTGCCGTCAATGGTTCAGCTTCGGTATCTGCTACTACAGTCAGGAGTGATTTACAGTCACAACGCCCGCCACATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTGGGAGTAAAGGAGTTAATGATATGACTGGAGCTATTTTAAGCTCAAATGAGGATTCAGAGAGGCCAGATAGAGCCTTGGGTCCGTCACGACCATGGTTGGATCCTAGGATCAACATGCAGAATAATCAGCACACCCATAGAGATGGATTTAGTGATTCTGTTCTCGGAAAGACCATTGGTGGATCATGTGGGGGCAGTGAATATAGTTCTGGCATTTCAAGTAATTTGATTTCAGGGGCTGGAAGAACTGGAAGTAGGCTCGTTGATTTAGGAAATGAAAAACCATGGTTCAAAACAGGTGATGATGTAGAAACCATATCTGGGCAAGGAAATGGTATCGGTCTCAAGCGCAGTTTTTCAAATCATGAAGCACCGAAGTCCATTAATTTGGATGCACATCGTCAGCCAAGACAAGACATAACTAACATACAGAGCAATGTGACGTCAGGTAACTGGAAAAATTCTGAAGAGGAGGAATTCACGTGGGATGAAATGAACTCTGGTTTGACTGATCATGGTCCCAATGTGTCAAGCAATTTGAGCACAGACTCGTGGATGGCTGATGACGAAAATTTGGAAGGTGAAGATCAGATCCAAATTACACGCCCTTTTGGGGCAAAGGTTGATAGAGAAATACCCACCGCTAAGAAACAAGTACCTGGTTTTGGTGGCCATCCACCGTCATCATGGCAATTGCAGAGGCAACACTCGGTTGATAAGCTGAATCTGAAGCCAGGTTACTCAGAAGGATTTGTGTCTACTCTCAGTGGTTTACCTACCAATGCAAGTTCATTGGCTGCCAAAAAGGGAAACCAATCTTTTATGCCGAATGCAGTAGTAGGAACGGCCAAAATTGTGGGACAACAATCTGATTCGGGGGATACTGAATCCCCTTCTGGGCAGTCACCTTTGCGACAACAGTCTCCATCACTGTCGGCAACAGTACACCATCATTCAATGCAAAATTTGGTTGAGCAAGAAATGCCCCAGAATCTCAAAACATCTCAATTTTTGGGAGGTCCAAGAAGTCAACATATTAGAGATCCATCACCTACCCTTCGTCCCATTGTTCAGGTTAGTAACTTGCGAAGATCACAGGAAAAGGACTCGCAGGGCTCATTATCTTCTGTAACTTCTATTCGACCAAAGCTTCAGCAACAAAAGCTGGGCCCTTCTCCGACTGAAGTTACTGCTAAAACTAAGTTGCCCCAGTCTAAAATTTCTTTAGCCAGAGAAACTTCAGAACAGTTGACCACAGTTAATTTGCCAGCTGCAGCTAACAAGAGTGGAATTATCCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAATCTTCCATCTCAGTCTGGGGTTCAGCCTACTCGGTCTGGTAGGTCTTCTACCCCATTAATTTCTTCAGGATCTGCAGTTGCATCACCATCTTCAATAGATCCTCTGCATAACGAATCATCTGCACTGCCAAAAAAACTTCAAGGAAAGGCTGGGCAACCACCACGAAGGCTTTCTACTCAACCACCTGCGTCCTCTAATGTGAGCAGTTCCTCAGCTCCGAGCTTAAATGCTACCAATAATAATAACTTAAATCCATTTAAAAACCTCTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCCGAAACAGAATCGCCAACTGTGGTACGAAGTGAGGTGCCGCTGGGTTCCAAAGATCAAACTGAAATCAGTACCACCTGTAGCTCTTTACCAGTTACATCAGTTTCTGGTTCTGTAGCTGGCCTGGTATCTTCTTCCATAGATGAGGTAGCCGCTGCTACAAAACCCCCTCTTGCATTACCTCAATCAACTAGCATGGAAATCAGAAATCTCATTGGCTTTGATTTTAGACCTAATGTAATTAGAGATTTCCATCCACTTGTAATTAGTGAATTATTGGATGATTTCCCTCATCACTGCCAAATTTGCGGTATTAGGCTTAAACTAGAAGAACAGTTAAATAGACACTTGGAGTGGCATGCCTCAAGAGAACAACATGGTCTAATTAATGCATCAAGAAGTTGGTATCCAAAGTCAAGTGTTTGGATTTCTGGCAAGGCAGAATATTCACCCGAGCTTGAGTTTACCGACTCTGTTGGTGTATATGACAAGGAAACAGACAGCAGTGAATTTGATACGATGATTGTAACAGATGAAAACCAATGCTTGTGTGTTTTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCAGGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTACTCAGATATCAATAGTGAGATGGAAAGTAGAAATGTGGGCCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAACTATCATCAATTTGGATAATGATCGATGA 3111 0.4407 MESTRRSLDRSREPGPKKPRLIDELSSRQLPQRQQGSGAVATLASARFRTNDRDSENSDLGRGGGVGGYHPQPPPHQELVAQYRTALAELTFNSKPIITNLTIIAGENQSAAKAIAAIVCANILEVPSDQKLPSLYLLDSIVKNIGWDYIKYFAARLPEVFCKAYRQVDPSVHSSMRHLFGTWKGVFPPQSLQMIEKELGFAPAVNGSASVSATTVRSDLQSQRPPHSIHVNPKYLERQRLQQSSGSKGVNDMTGAILSSNEDSERPDRALGPSRPWLDPRINMQNNQHTHRDGFSDSVLGKTIGGSCGGSEYSSGISSNLISGAGRTGSRLVDLGNEKPWFKTGDDVETISGQGNGIGLKRSFSNHEAPKSINLDAHRQPRQDITNIQSNVTSGNWKNSEEEEFTWDEMNSGLTDHGPNVSSNLSTDSWMADDENLEGEDQIQITRPFGAKVDREIPTAKKQVPGFGGHPPSSWQLQRQHSVDKLNLKPGYSEGFVSTLSGLPTNASSLAAKKGNQSFMPNAVVGTAKIVGQQSDSGDTESPSGQSPLRQQSPSLSATVHHHSMQNLVEQEMPQNLKTSQFLGGPRSQHIRDPSPTLRPIVQVSNLRRSQEKDSQGSLSSVTSIRPKLQQQKLGPSPTEVTAKTKLPQSKISLARETSEQLTTVNLPAAANKSGIIPKKSITSNLDPRNLPSQSGVQPTRSGRSSTPLISSGSAVASPSSIDPLHNESSALPKKLQGKAGQPPRRLSTQPPASSNVSSSSAPSLNATNNNNLNPFKNLLSSLVAKGLISAETESPTVVRSEVPLGSKDQTEISTTCSSLPVTSVSGSVAGLVSSSIDEVAAATKPPLALPQSTSMEIRNLIGFDFRPNVIRDFHPLVISELLDDFPHHCQICGIRLKLEEQLNRHLEWHASREQHGLINASRSWYPKSSVWISGKAEYSPELEFTDSVGVYDKETDSSEFDTMIVTDENQCLCVLCGELFEDVYCQERNEWMFKGAVYMNYSDINSEMESRNVGPIIHAKCLSENSTIINLDNDR 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02477 1036 MobiDBLite consensus disorder prediction 599 652 - -
Cca03g02477 1036 Gene3D - 72 200 IPR008942 -
Cca03g02477 1036 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 1028 - -
Cca03g02477 1036 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 1028 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Cca03g02477 1036 ProSiteProfiles Zinc finger C2H2 type domain profile. 888 915 IPR013087 -
Cca03g02477 1036 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Cca03g02477 1036 MobiDBLite consensus disorder prediction 679 727 - -
Cca03g02477 1036 MobiDBLite consensus disorder prediction 533 561 - -
Cca03g02477 1036 Pfam CID domain 85 193 IPR006569 -
Cca03g02477 1036 MobiDBLite consensus disorder prediction 241 261 - -
Cca03g02477 1036 ProSitePatterns Zinc finger C2H2 type domain signature. 890 910 IPR013087 -
Cca03g02477 1036 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g02477 1036 MobiDBLite consensus disorder prediction 679 770 - -
Cca03g02477 1036 MobiDBLite consensus disorder prediction 27 41 - -
Cca03g02477 1036 MobiDBLite consensus disorder prediction 241 280 - -
Cca03g02477 1036 MobiDBLite consensus disorder prediction 743 770 - -
Cca03g02477 1036 MobiDBLite consensus disorder prediction 1 76 - -
Cca03g02477 1036 SMART 558neu5 78 200 IPR006569 -
Cca03g02477 1036 CDD CID_Pcf11 80 192 - -
Cca03g02477 1036 MobiDBLite consensus disorder prediction 579 652 - -
Cca03g02477 1036 SUPERFAMILY ENTH/VHS domain 75 203 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02477 Cca-Chr3 45948061 45954240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02477 67 414 C2H2 Transcription Factor Family AT4G04885 39.835 1.89e-57 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02477 K14400 - gmx:100788958 1543.48