Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02475 ATGGAAATGCCCGCCAGAAGATCCAACTACTCCCTCCTCAACCAAACTTCCGACCACCACTCGCCGACGTTGTTGGGTTCCTCTTCTGGCGACGGTAACAACAACAACAGCAAGCTGGAGAGAGCCTCTGATTGGGACTCCGTCGATCACAGACAGGTGAATCGGATCGGGAATTTGTACTCCTCGATCGGGTTGCAGCGCCAGTCCAGTGAGAGCAGTTTCGGCGGGAGCTCGCTCTCCGGCGAGCTTTACGCGCCGACTCTGTCGACCGCCGCCGCCAGTGAGATCGACGTCTTCGGCTTAGACGGATTCAAATTCGGCGAAGCCAGAGGCAGGTTTCCGGACGCTGCGGCGGCGATGAGCGGCGGGTCCTCTAGCAAGAGCTGGGCGCAGCAGACGGAGGAGAGTTATCAGTTGCAGCTTGCATTGGCTCTTCGGCTTTCCTCGGATGCCACGTGTGCTGATGATCCCAATTTTCTGGATCCCGTGCCCGGTGAATCCGCTTCGAGGTTCTCTTCGTCGTGTTCCGCAGAGGCAGTGTCGCATAGGTTTTGGGTGAATGGCTGCCTATTATACTTCGACAAAATTCCTGATGGCTTTTATCTAATCCATGGGATGGATCCCTATGTATGGACTGTGTGCACTGATCTGCAGGAAAATGGTCGAATTCCTTCAATTGAGACACTAAAATCTCTAGATCCCTCTTGTGATTCTTCACTTGAAGTAGTTTTGGTGGATAGACGCAGTGATCCTATCTTAAAAGAACTGCAAAACAAGGTACATGACATCCCTTGTCGCTGCATAGCAACAACAGATGTTGTAGACCAGCTTGCGAAGCTGGTTTGCAATTGTATGGGGGGTTCAGCTTCTGTATGGGAAGATGACCTTTATCCCATATGGAGGGAGCGCATTAATGATCTAAGAGATTGCTTAGGATCTGTTGTTGTTCCAATTGGCAGTCTATCTACTGGACTTTGCAGGCATCGTGCTGTATTATTCAAAGTACTAGCTGACACCATTGATTTACCATGTCGCATTGCAAAGGGCTGTAAATATTGTTCAAGAGATGATGCCTCCTCATGTCTTGTTAGATTTGGGCTTGATAGGGAATACATGGTTGATCTAATTGGGAAGCCAGGTTGCTTATGCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTTCAAGACTTAAACCAGCAGAACCTACCATTGATTTCAGGTCACTGGCCAAACAATATTTCTCGGATTGTATGTCTGCCAAGCTTGTCTTTGATAGTGTTCCTGCAGAACAGTATGAAAGGCAGCACAGGGACCAGAACCCTGGACCAATTCCAGTTGATAACAGAAGTTCTCTTGTTCCTTTGCATCCACAAGCTTATCATTCAAGCACACATGATCGAGGATCTGAAACATATAGAGCAGGTAACCCTCCTCAGAAATTTGTGGTTCCAACAATTACAGCCAAGGATTCATTGCCTTCAAAACAAAACCGCCCTGGTCATAGAGATACACAAACCCGGCTACTGATTCCTAGAAAACCAACTAGAGAGTTTGCCCTTGATATGGAGGATTTGGACATACCATGGACTGATCTTGTTTTAAAAGGGAGAATAGGATCAGGTTCTTTTGGAACTGTACATCATGCTGAGTGGAATGGCTCGGAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCAAAGAATTCCTAAGGGAGGTTGCAATAATGAAAGGCTTACGGCATCCTAACATCGTTTTATTGATGGGTGCAGTCACTAAGCCTCCTAATTTATCAATTGTCACAGAATATTTGTCAAGGGGTAGCTTGTATAGGCTGTTGCATAAACCGGGCGCCACAGAGATGTTGGATGAGAGACGTAGGCTAAGTATGGCGTATGATGTGGCTAAGGGGATGAATTATCTTCATAAACGCAATCCTCCCATTGTGCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAGGAAATATACAGTGAAGGTTGGTGATTTTGGGCTTTCTAGACTAAAGGCAAACACATTTCTCTCATCCAAGTCAGCTGCTGGGACTCCTGAATGGATGGCTCCAGAAGTTCTTCGTGATGAGCCATCCAATGAGAAGTCAGATGTTTACAGCTTTGGTGTCATCTTGTGGGAGCTTGCAACACTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGgttgtggcggctgttggctttaagggaaaaagacttgagataccacgtgatTTAAATCCTCAATTAGCCTCAGTAATTGAGGCTTGCTGGGCCAATGAACCCTGGAAACGCCCTTCTTTTTCAAGTATTATGGATTCTTTGAAAGTATTACTCAAACCCCCTGCACCTCAACCTGGTCATCCAAACATGGCATTACTACCTGAATAG 2451 0.4561 MEMPARRSNYSLLNQTSDHHSPTLLGSSSGDGNNNNSKLERASDWDSVDHRQVNRIGNLYSSIGLQRQSSESSFGGSSLSGELYAPTLSTAAASEIDVFGLDGFKFGEARGRFPDAAAAMSGGSSSKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPVPGESASRFSSSCSAEAVSHRFWVNGCLLYFDKIPDGFYLIHGMDPYVWTVCTDLQENGRIPSIETLKSLDPSCDSSLEVVLVDRRSDPILKELQNKVHDIPCRCIATTDVVDQLAKLVCNCMGGSASVWEDDLYPIWRERINDLRDCLGSVVVPIGSLSTGLCRHRAVLFKVLADTIDLPCRIAKGCKYCSRDDASSCLVRFGLDREYMVDLIGKPGCLCEPDSLLNGPSSISFSSPLRFSRLKPAEPTIDFRSLAKQYFSDCMSAKLVFDSVPAEQYERQHRDQNPGPIPVDNRSSLVPLHPQAYHSSTHDRGSETYRAGNPPQKFVVPTITAKDSLPSKQNRPGHRDTQTRLLIPRKPTREFALDMEDLDIPWTDLVLKGRIGSGSFGTVHHAEWNGSEVAVKILMEQDFKGERFKEFLREVAIMKGLRHPNIVLLMGAVTKPPNLSIVTEYLSRGSLYRLLHKPGATEMLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDRKYTVKVGDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWSNLNPPQVVAAVGFKGKRLEIPRDLNPQLASVIEACWANEPWKRPSFSSIMDSLKVLLKPPAPQPGHPNMALLPE 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02475 816 MobiDBLite consensus disorder prediction 8 41 - -
Cca03g02475 816 Pfam Protein tyrosine and serine/threonine kinase 542 795 IPR001245 GO:0004672|GO:0006468
Cca03g02475 816 Gene3D Transferase(Phosphotransferase) domain 1 620 803 - -
Cca03g02475 816 ProSiteProfiles Protein kinase domain profile. 541 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02475 816 Gene3D Phosphorylase Kinase; domain 1 534 619 - -
Cca03g02475 816 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 117 804 - -
Cca03g02475 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Cca03g02475 816 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 117 804 - -
Cca03g02475 816 ProSitePatterns Protein kinases ATP-binding region signature. 547 568 IPR017441 GO:0005524
Cca03g02475 816 MobiDBLite consensus disorder prediction 1 46 - -
Cca03g02475 816 SUPERFAMILY Protein kinase-like (PK-like) 520 795 IPR011009 -
Cca03g02475 816 MobiDBLite consensus disorder prediction 469 489 - -
Cca03g02475 816 CDD STKc_MAP3K-like 547 795 - -
Cca03g02475 816 PRINTS Tyrosine kinase catalytic domain signature 615 628 IPR001245 GO:0004672|GO:0006468
Cca03g02475 816 PRINTS Tyrosine kinase catalytic domain signature 656 674 IPR001245 GO:0004672|GO:0006468
Cca03g02475 816 PRINTS Tyrosine kinase catalytic domain signature 703 713 IPR001245 GO:0004672|GO:0006468
Cca03g02475 816 PRINTS Tyrosine kinase catalytic domain signature 722 744 IPR001245 GO:0004672|GO:0006468
Cca03g02475 816 PRINTS Tyrosine kinase catalytic domain signature 766 788 IPR001245 GO:0004672|GO:0006468
Cca03g02475 816 Pfam Ethylene-responsive protein kinase Le-CTR1 177 383 - -
Cca03g02475 816 SMART serkin_6 541 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02475 Cca-Chr3 45915329 45927033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02475 1 811 MAP Kinase Kinase Kinase AT5G03730 64.471 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Cca03g02475 PK_Tyr_Ser-Thr 3.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02475 K14510 - gmx:100810555 1368.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02475 03 45915329 45927033 Cca03g02475 03 45915329 45927033 ECH
Cca03g02475 03 45915329 45927033 Cca02g00516 02 11049976 11058933 PCT