Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02473 ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGACCCAGGAGATGATAAGATTGTTCACCTTTCAAATGCATGCCTGGGGGATGTGACTAAGGATAAAGGAGGTGAACCTGTAGCCCTGTATGTGAAGTTTGGTAACCAGAAGCTTGTACTTGGAACGCTTTCTTCTGATAAATTTCCTCAAATATCTTATGATCTGGTATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAAAATGGAAGTGTCTTCTTTACTGGATTTAAAGCTGAGTCTCACTTGGAGTCTGATAATGATGAAGATTCTGATGATTTTGATGAAGATATTCCAGTCAGTGCTGCCAATGGGAAACCTGAGTTTGAGGTAAAGAATGGTGTCAAATCTAATGCAAATGAAGCTAAACAGAAGGAGAAGAAAGCAGATCCAAGAAAGGATGAGAAGGCTATGGAAAAGGATGCAAGCGACGAAGATGAAGATGAAGATTCATCTGAAGCTGATTCTGATGAGGATTCAAGTGAAGACAAGCTCACAGTGAATGGTGACATAGAAAGTAGtgaaggtgatgatgatagcgatgaggaggaggatgatgatgatgaatctgattatgaGAAGACACCCAAGAAGATTGAAGCAAGCAATAAGAGGGTTATTGACTCTTCTAAGAAAACACCTGTTCCTGTGAAGAAGACAAAATTCGTTACTCCTCAGAAGACTGATGGCAAAAGTGTTGTCCATGTTGCAACTCCTCACCCTTCTAAGCAGGCTGGTAAAGCAACTGTTAATAACAAGCAGACTCCAAGGTCAGGTGGAGATTACACCTGCAAGTCTTGCAACAGGTCATTTAAGACAGATGATGCCTTAAATTCGCATAATAAGGCCAAGCACAGTGCTAAGTGA 915 0.3847 MEFWGVEVKSGESLKVDPGDDKIVHLSNACLGDVTKDKGGEPVALYVKFGNQKLVLGTLSSDKFPQISYDLVFEKEFELSHNWKNGSVFFTGFKAESHLESDNDEDSDDFDEDIPVSAANGKPEFEVKNGVKSNANEAKQKEKKADPRKDEKAMEKDASDEDEDEDSSEADSDEDSSEDKLTVNGDIESSEGDDDSDEEEDDDDESDYEKTPKKIEASNKRVIDSSKKTPVPVKKTKFVTPQKTDGKSVVHVATPHPSKQAGKATVNNKQTPRSGGDYTCKSCNRSFKTDDALNSHNKAKHSAK 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02473 304 MobiDBLite consensus disorder prediction 188 206 - -
Cca03g02473 304 MobiDBLite consensus disorder prediction 157 176 - -
Cca03g02473 304 MobiDBLite consensus disorder prediction 260 290 - -
Cca03g02473 304 MobiDBLite consensus disorder prediction 99 304 - -
Cca03g02473 304 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 300 - -
Cca03g02473 304 MobiDBLite consensus disorder prediction 207 231 - -
Cca03g02473 304 MobiDBLite consensus disorder prediction 135 156 - -
Cca03g02473 304 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 300 - -
Cca03g02473 304 ProSitePatterns Zinc finger C2H2 type domain signature. 280 301 IPR013087 -
Cca03g02473 304 Pfam C2H2-type zinc finger 278 302 - -
Cca03g02473 304 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Cca03g02473 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 304 IPR013087 -
Cca03g02473 304 Gene3D Nucleoplasmin core domain 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02473 Cca-Chr3 45835790 45846661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02473 1 303 C2H2 Transcription Factor Family AT5G03740 42.308 4.38e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g02473 NPL 1.4e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02473 - - ccaj:109796568 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02473 03 45835790 45846661 Cca03g02473 03 45835790 45846661 ECH