Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02461 ATGGAGCACAATGCTCTAGGTGGTGGAATATTTCCCAACATAAGTAGTGGTTTGCTAGGAGTAGAAAACCCTATACAGCAACAACAACCAAACCTTCAAAACCAGCAAAACTCTCACCCTTTGCACCATCCCCAAATGGTTTCCTATGCCACTGACCCacatcaacaacaaccacagcaatcaatcaaacatggctacaactattcagcaacaaagagcaacaagccacaaATCACACTCAGTGATGAAGATGAACCCGGGTTCACTGCAGAAGATAACAGCTCTGGGGACCCCAAGAGGAAGGTGTCACCATGGCATAGAATGAAGTGGACTGACACCATGGTAAGGCTCTTAATAATGGCTGTTTATTACATCGGAGACGAGGCTGGTTCAGAAGGCACTGACCCCACCAAGAAGAAAGCCACAGGGTTGCTTCAAAAGAAAGGTAAGTGGAAATCAGTGTCAAGGGGCATGATGGAAAAGGGTTACTACGTGTCTCCTCAGCAATGTGAAGACAAGTTCAACGATCTGAACAAGAGGTACAAGAGGGTCAACGACATTCTTGGCAAGGGCACAGCTTGTAGGGTGGTGGAGAATCAAAGTTTGTTAGACACTATGGATCTGTCACCAAAGATGAAGGAAGAAGTAAGAAAGTTGCTGAACTCCAAGCACTTGTTCTTCAGGGAAATGTGTGCTTACCACAACAGTTGTGGCCACAACAACTGTGGCACTTCGAACGTGCAACAACAGTCAACTGAGGCTCAACCACATGGTACTCCgcaacagcaacatcagcatcagcatcagcaatgcttgcattcatcagaaaatggagtagggagtctgagaatgttgaaagaggacgaggatgaggacgaggaggaggattcggaggaggattccgatgaggaggaagaggaatcaggagatgagaatgatgtgatgaggaagagggcaaagaagGTAGGGTTCGGTGTGtcatcatcatcatcatcatcgttatctcaGGTGATGCAGCAGTTGAGTGGTGAAGTGAGTGGTGTGTTGCAAGATGGAGGGAAGAGTGGTTGGGAGAAGAAGCAGTGGATGAAGAAGAGGGTGGTGCAGTTGGAGGAACAGCAAGTGAGTTATCAAATGCAGGCGTTTGAGTTGGAAAAGCAACGGTTGAAGTGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAGATGGAGAGAGATAAGCTTCAAAATGAACGAAGGAGGTTGGAGATCGAGAGAATGGTTTTGCTAATTCGCCAGAAGGAGCTTGAATTGCTTAATATTcagccgcagcagcagcatcaacagcaacaTTCTTCTACCTAG 1341 0.3579 MEHNALGGGIFPNISSGLLGVENPIQQQQPNLQNQQNSHPLHHPQMVSYATDPHQQQPQQSIKHGYNYSATKSNKPQITLSDEDEPGFTAEDNSSGDPKRKVSPWHRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPTKKKATGLLQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLDTMDLSPKMKEEVRKLLNSKHLFFREMCAYHNSCGHNNCGTSNVQQQSTEAQPHGTPQQQHQHQHQQCLHSSENGVGSLRMLKEDEDEDEEEDSEEDSDEEEEESGDENDVMRKRAKKVGFGVSSSSSSSLSQVMQQLSGEVSGVLQDGGKSGWEKKQWMKKRVVQLEEQQVSYQMQAFELEKQRLKWARFSSKKEREMERDKLQNERRRLEIERMVLLIRQKELELLNIQPQQQHQQQHSST 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02461 446 Gene3D - 110 183 - -
Cca03g02461 446 MobiDBLite consensus disorder prediction 67 103 - -
Cca03g02461 446 Coils Coil 367 387 - -
Cca03g02461 446 Coils Coil 287 307 - -
Cca03g02461 446 MobiDBLite consensus disorder prediction 286 315 - -
Cca03g02461 446 MobiDBLite consensus disorder prediction 287 310 - -
Cca03g02461 446 Coils Coil 397 424 - -
Cca03g02461 446 MobiDBLite consensus disorder prediction 246 273 - -
Cca03g02461 446 Pfam Myb/SANT-like DNA-binding domain 107 232 IPR044822 -
Cca03g02461 446 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 446 - -
Cca03g02461 446 PANTHER F16F4.11 PROTEIN-RELATED 1 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02461 Cca-Chr3 45697493 45699315 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca03g02461 Myb_DNA-bind_4 8.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02461 - - gmx:547619 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02461 03 45697493 45699315 Cca03g02461 03 45697493 45699315 ECH
Cca03g02461 03 45697493 45699315 Cca02g00504 02 10746135 10748130 PCT