Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02459 ATGGAATTCAAAGAAAGGGATCAAGACAGGAAACTGGAAACAGACATGGATTGGCATCACAACACAAAACTGCCGTATGTTCCTCGCCCAGACTCCTCCTTAAGCTTCTTCTACAACTGCAACAACGACAACAACCCATATCCAGTGGAAGTGAAACAACCGACATTGATGGATACAGAACAAATGTCGGTTCCAACAAAGGACAACGGAAACAAAGAGAAGAAGAAAAGATTAACAAATAACCAGATAGAGTTATTGGAGAGGAGTTTTCAGGAGGAGATAAAGTTGGACCCTGAAAGGAAAATGAAGCTTTCGAGGGAACTAGGCCTCCAACCTCGCCAAATCGCTGTTTGGTTTCAAAATAGACGTACAAGGTGGAAGGCCAAGCAGCTTGAGCACTTGTACGATGTGCTTAAACACCAATATGATGTCATCTCCGACGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAATGCTAAGTAGAGAGCAAGGTTTCGGGAACCAAACATATGGAGGTTATACAGAAATATCAGGGGAAGAAACAGTAGAAAGCACGTCAGAGGGTCTAAGGGTTTCGAACACGGCACGGGGAAAGAGCACCATTGAGCAAGTTGCAGATCAGGTTTATAGTCCTTTCACTGTGGAAGATTATAACAACACAGTTACACTGCCTCACTGCCACTGGCCTGTTGTGCCTTACTAG 714 0.4398 MEFKERDQDRKLETDMDWHHNTKLPYVPRPDSSLSFFYNCNNDNNPYPVEVKQPTLMDTEQMSVPTKDNGNKEKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKHQYDVISDEKQKLQEEVMKLKAMLSREQGFGNQTYGGYTEISGEETVESTSEGLRVSNTARGKSTIEQVADQVYSPFTVEDYNNTVTLPHCHWPVVPY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02459 237 Pfam Homeodomain 72 127 IPR001356 GO:0003677
Cca03g02459 237 SMART HOX_1 71 133 IPR001356 GO:0003677
Cca03g02459 237 Coils Coil 135 162 - -
Cca03g02459 237 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 16 234 - -
Cca03g02459 237 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Cca03g02459 237 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Cca03g02459 237 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
Cca03g02459 237 CDD homeodomain 72 130 IPR001356 GO:0003677
Cca03g02459 237 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Cca03g02459 237 SUPERFAMILY Homeodomain-like 59 131 IPR009057 -
Cca03g02459 237 Pfam Homeobox associated leucine zipper 129 163 IPR003106 GO:0006355|GO:0043565
Cca03g02459 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 16 234 IPR045224 GO:0003700
Cca03g02459 237 Gene3D - 65 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02459 Cca-Chr3 45670569 45673230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02459 16 159 Homeobox Transcription Factor Family AT5G03790 51.205 4.19e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca03g02459 Homeodomain 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02459 - - ccaj:109798071 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02459 03 45670569 45673230 Cca03g02459 03 45670569 45673230 ECH
Cca02g00503 02 10689277 10691909 Cca03g02459 03 45670569 45673230 PCT