Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g02459 | ATGGAATTCAAAGAAAGGGATCAAGACAGGAAACTGGAAACAGACATGGATTGGCATCACAACACAAAACTGCCGTATGTTCCTCGCCCAGACTCCTCCTTAAGCTTCTTCTACAACTGCAACAACGACAACAACCCATATCCAGTGGAAGTGAAACAACCGACATTGATGGATACAGAACAAATGTCGGTTCCAACAAAGGACAACGGAAACAAAGAGAAGAAGAAAAGATTAACAAATAACCAGATAGAGTTATTGGAGAGGAGTTTTCAGGAGGAGATAAAGTTGGACCCTGAAAGGAAAATGAAGCTTTCGAGGGAACTAGGCCTCCAACCTCGCCAAATCGCTGTTTGGTTTCAAAATAGACGTACAAGGTGGAAGGCCAAGCAGCTTGAGCACTTGTACGATGTGCTTAAACACCAATATGATGTCATCTCCGACGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAATGCTAAGTAGAGAGCAAGGTTTCGGGAACCAAACATATGGAGGTTATACAGAAATATCAGGGGAAGAAACAGTAGAAAGCACGTCAGAGGGTCTAAGGGTTTCGAACACGGCACGGGGAAAGAGCACCATTGAGCAAGTTGCAGATCAGGTTTATAGTCCTTTCACTGTGGAAGATTATAACAACACAGTTACACTGCCTCACTGCCACTGGCCTGTTGTGCCTTACTAG | 714 | 0.4398 | MEFKERDQDRKLETDMDWHHNTKLPYVPRPDSSLSFFYNCNNDNNPYPVEVKQPTLMDTEQMSVPTKDNGNKEKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKHQYDVISDEKQKLQEEVMKLKAMLSREQGFGNQTYGGYTEISGEETVESTSEGLRVSNTARGKSTIEQVADQVYSPFTVEDYNNTVTLPHCHWPVVPY | 237 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g02459 | 237 | Pfam | Homeodomain | 72 | 127 | IPR001356 | GO:0003677 | |
Cca03g02459 | 237 | SMART | HOX_1 | 71 | 133 | IPR001356 | GO:0003677 | |
Cca03g02459 | 237 | Coils | Coil | 135 | 162 | - | - | |
Cca03g02459 | 237 | PANTHER | HOMEOBOX LEUCINE ZIPPER PROTEIN | 16 | 234 | - | - | |
Cca03g02459 | 237 | ProSitePatterns | 'Homeobox' domain signature. | 104 | 127 | IPR017970 | GO:0000981|GO:0006355 | |
Cca03g02459 | 237 | PRINTS | Lambda-repressor HTH signature | 109 | 125 | IPR000047 | GO:0003677 | |
Cca03g02459 | 237 | PRINTS | Lambda-repressor HTH signature | 100 | 109 | IPR000047 | GO:0003677 | |
Cca03g02459 | 237 | CDD | homeodomain | 72 | 130 | IPR001356 | GO:0003677 | |
Cca03g02459 | 237 | ProSiteProfiles | 'Homeobox' domain profile. | 69 | 129 | IPR001356 | GO:0003677 | |
Cca03g02459 | 237 | SUPERFAMILY | Homeodomain-like | 59 | 131 | IPR009057 | - | |
Cca03g02459 | 237 | Pfam | Homeobox associated leucine zipper | 129 | 163 | IPR003106 | GO:0006355|GO:0043565 | |
Cca03g02459 | 237 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 16 | 234 | IPR045224 | GO:0003700 | |
Cca03g02459 | 237 | Gene3D | - | 65 | 136 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g02459 | Cca-Chr3 | 45670569 | 45673230 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g02459 | 16 | 159 | Homeobox Transcription Factor Family | AT5G03790 | 51.205 | 4.19e-40 | 135 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Cca03g02459 | Homeodomain | 3.4e-16 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g02459 | - | - | ccaj:109798071 | 481.87 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g02459 | 03 | 45670569 | 45673230 | Cca03g02459 | 03 | 45670569 | 45673230 | ECH | |
Cca02g00503 | 02 | 10689277 | 10691909 | Cca03g02459 | 03 | 45670569 | 45673230 | PCT |