Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02458 ATGGTTCTCAAAACTGAACTATGCCGATTCAGTGGTGCTAAGATCTACCCTGGAAGAGGCATCAGGTTTGTTCGTGGTGATTCTCAGGTCTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAACCGTTTGAAGCCATCAAAGCTTACCTGGACAGCAATGTACCGGAAGCAACACAAAAAGGACATTGCTCAAGAAGCCGTGAAAAAAAGGAGACGTGCTACCAAGAAGCCTTACTCTAGGTCCATTGTTGGTGCCACTTTGGAAGTTATCCAGAAAAAGAGAACTGAGAAGCCTGAAGTTCGTGACGCAGCTAGAGAAGCTGCTCTTCGTGAAATTAAAGAGAGGATCAAAAAAACAAAGGACGAGAAGAAGGCTAAGAAAGCAGAAGTAGCTAAGTCGCAAAAAGCAAAATCGACAGGTATCTCGAAGGGTGCTATGCCCAAAGGTCCCAAACTCGGTGGCGGAGGGGGCAAGCGCTGA 489 0.4581 MVLKTELCRFSGAKIYPGRGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKAKSTGISKGAMPKGPKLGGGGGKR 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02458 162 MobiDBLite consensus disorder prediction 117 136 - -
Cca03g02458 162 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Cca03g02458 162 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Cca03g02458 162 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Cca03g02458 162 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Cca03g02458 162 Gene3D - 69 140 - -
Cca03g02458 162 MobiDBLite consensus disorder prediction 117 162 - -
Cca03g02458 162 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Cca03g02458 162 PANTHER 60S RIBOSOMAL PROTEIN L24 3 162 IPR000988 -
Cca03g02458 162 Coils Coil 112 139 - -
Cca03g02458 162 PANTHER 60S RIBOSOMAL PROTEIN L24 3 162 - -
Cca03g02458 162 SMART 4TRASH 8 46 IPR011017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02458 Cca-Chr3 45665030 45667232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02458 1 155 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.713 1.04e-82 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02458 K02896 - twl:119999010 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02458 03 45665030 45667232 Cca03g02458 03 45665030 45667232 ECH
Cca03g02458 03 45665030 45667232 Cca02g00502 02 10676294 10678513 PCT