Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02452 ATGATTGCTGAATCAAACATGAGACTCACCTTCTATTTTTGCCATGCTTTTCTTCTTTCCCTTCTCCTTGCCCACTACACTTCTTCACAGAAAACTTGTCCAAACTGTGGCTCTATGCAACTTCCATATCCTTTGAGCACACATCCAAGTTGCGGTGATCCCTACTACAAGCTTCGTTGTGATCCCCACTCTCAAAGGCTTTTCTTTGACACCCTCAATGAAAGCTCCTATCTCATACTCAGAATCATGCCTTCACTCCAACGCATGGTGCTACAACCTTCACCTTGGTTACCAGGTTCGTGTGTTACACAAGACATGCCAAGAAGCAATGGTATATGGCTAAACCAATCACTTCCTTTCAACATAACTTCATCAAACACGGTTTTTCTCTTTAACTGTTCCCCTCGCCTCTTGGTTTCTCCTCTTAACTGTTCTTCTTCTAGTATTTGCCATCGTTACTTGGAGAGTTCAGGCCATGTTGACACAAAAAAATCACTTGAGTGTGCAAGTGGTCTTCACCCTTGTTGCACCTTTCTAGCTGGTGGAATACCTTCAGCTTACAGGATCAGGCTTCATGATTCTGGTTGCAAAGCATTCAGAAGCATCCTTCATTTGAACCAAGACAAGCCTCCTAATCAGTGGGAAGAAGGCCTTGAAATTCAATGGGATCCTCCACCGGAACCAGTTTGTGAGACACAAAGGGATTGCTCTGAAGACTCCAAGTGTTCCCCTTCTGGTAGAAATGGCATATTTCGATGTCTTTGTAATGGGGGACACAGATGGAACCCTTTTATGGCAACCTGTGTGAGGTATGAGAGAAAATCCAAATGGGAAACCAGCTTGGTGGTCTCAATAGGGGTTGTTGTTACTTTTTTCTCTCTTGCTGTGGTTCTCACCATCATCACAAAGTCTTGCAAAATCACTACCTATAGAGAGAATCAGGCCAAGGAAAGGGAAAATGGGCTGAAATCAAGCGCTGGTGAGAAGCCTTGTAGGATGTTTCAACTCAAAGAGGTGAAGAAAGCAACAAATGGTTTTTCCCAGGAGAGGTTCTTAGGGAGTGGTGGATTTGGTGAAGTTTACAAAGGTGAGTTACAAGATGGAACTTTTGTGGCTGTGAAGAGGGCTAGAGTGGGAAGTCTGAAAAGCACTCAACAAGTGCTTAATGAAGTTGCAATACTCTCTCAAGTCAATCACAAGAACCTAGTCAGGCTCTTGGGGTGCTGTGTGGAATCTGAGCTTCCACTGATGATCTATGAGTATATCTCAAATGGGACCCTCTATGACCATCTTCATGGAAGGTATTGTTCCAACTTTCTAGATTGGAAAACAAGGCTCAAGGTTGCTTTTCAAACTGCAGAAGCATTGGCTTACTTGCATTCTGCTGCACACACTCCAATCTACCACAGAGATGTTAAGTCAACAAACATACTATTGGATGATGAATTCAATGCCAAGGTCTCAGATTTTGGACTCTCAAGATTGGCTACGCCGGGACTAAGCCATGTGTCAACATGTGCTCAGGGAACTTTGGGGTACTTGGATCCTGAGTACTACCGCAACTATCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAGCTTTTGACATCACAGAAAGCGATAGACTTCAATCGTGATCAAGATGATGTCAACCTAGCAATTCATGTGAATCAACATGCCAGCAATGGTACAATCATGGAAGTGATGGATCAAAGGCTTCTTTCCGAGGAGCCCTTGGGGGATAAATTGTTCACAAGCATAAAACTCTTCTTGGAGCTTGCACTTGAATGTCTAAGGGAGAAGAAAGGTGAAAGGCCTAATATGAGGGATATTTCTCAACGCCTGCAATGCATAATTAGGATTGAAGAACAAGAGTAA 1896 0.4314 MIAESNMRLTFYFCHAFLLSLLLAHYTSSQKTCPNCGSMQLPYPLSTHPSCGDPYYKLRCDPHSQRLFFDTLNESSYLILRIMPSLQRMVLQPSPWLPGSCVTQDMPRSNGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCSSSSICHRYLESSGHVDTKKSLECASGLHPCCTFLAGGIPSAYRIRLHDSGCKAFRSILHLNQDKPPNQWEEGLEIQWDPPPEPVCETQRDCSEDSKCSPSGRNGIFRCLCNGGHRWNPFMATCVRYERKSKWETSLVVSIGVVVTFFSLAVVLTIITKSCKITTYRENQAKERENGLKSSAGEKPCRMFQLKEVKKATNGFSQERFLGSGGFGEVYKGELQDGTFVAVKRARVGSLKSTQQVLNEVAILSQVNHKNLVRLLGCCVESELPLMIYEYISNGTLYDHLHGRYCSNFLDWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNAKVSDFGLSRLATPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFNRDQDDVNLAIHVNQHASNGTIMEVMDQRLLSEEPLGDKLFTSIKLFLELALECLREKKGERPNMRDISQRLQCIIRIEEQE 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02452 631 Gene3D Transferase(Phosphotransferase) domain 1 422 631 - -
Cca03g02452 631 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Cca03g02452 631 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 631 IPR045274 GO:0007166
Cca03g02452 631 ProSiteProfiles Protein kinase domain profile. 346 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02452 631 SUPERFAMILY Protein kinase-like (PK-like) 324 621 IPR011009 -
Cca03g02452 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Cca03g02452 631 Gene3D Phosphorylase Kinase; domain 1 305 421 - -
Cca03g02452 631 CDD STKc_IRAK 352 622 - -
Cca03g02452 631 Pfam Protein kinase domain 347 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02452 631 SMART serkin_6 346 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02452 631 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 23 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02452 Cca-Chr3 45600312 45602513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02452 33 631 Receptor kinase-like Gene Family AT5G02070 46.835 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca03g02452 Pkinase 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02452 - - gmx:100804678 1186.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02452 03 45600312 45602513 Cca03g02452 03 45600312 45602513 ECH