Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02450 ATGGCGGTTCCTCCCTCGGTCGCCGCCGCTCCGGCCTCCCTCTACGTCGGCGACCTCCACCCCGACGTCTCCGAAGGCCAGCTCGTCGACGCCTTCTCAGACTTCAAGACCCTCGCCTCCGTCCGCGTCTGCAAGGACTCCTCCACCGGCAAATCCCTCTGCTACGGCTACGTCAACTTCGTCTCTCCTCAAGACGCGATTCGCGCGATTGAGGTGAAGAATAATTCCATGCTGAATGGAAAAGCGATACGCGTGATGTGGTCGCGACGTGATCCTGACGCCAGGAAAAACACTATAGGGAACTTGTTTGTTAAGAACTTACCTGACTCGGTTGACAATGCCGGACTGCAAGATATGTTCAAAAAGTATGGGAATATTTTGTCCAGCAAAGTTGTCATGTCTGATGATGGAAAGAGCAAAGGATACGGATTTGTTCAATTCGAAACAGAGGAATCCTCAAGTGTTGCTATCGATAAGCTGAATGGCTCTGCTGTTGGTGATAAGCAGTTATATGTTGGGAAGTTTGTCAAAAAAAGTGATCGGGTTTTGCCTGGCCCTGATGCTAGATATACAAATTTGTACATGAAGAATTTGGACCCAGATATTACAGAAGCGATACTGCAGGAAAAGTTTTCCACTTTTGGGAAAATTATTAGCTTGGCTATTGCAAAGGACAACTGTGGGATGCCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCGGATGATGCTAAAAAGGCAATGGAAACAATGAATGGATCACAATTAGGTGCTAAGGTTCTGTATGTAGCCAGAGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCACCACCAATTTGAGGAGAAACGGAAGGAACAAATTTTGAAATACAAGGGATCAAACGTTTATGTGAAGAACATTGATGACAATGTAAATGATGAAGAACTGCGACATCATTTTAGTCCATGTGGCACTATAACATCTGCAAAAGTTATGCGAGATGAAAAAGGGATAAGTAAAGGGTTTGGTTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAATACTTTTCATGGGTTCATGTTTCATGGTAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAAGATAGGAAAGCACAATTGCAGCTGCAGTACGCACAGCAGATGGCAGGACTAGCTGGACCCTCAACTGCCATTATCCCTGGTGGATATCCTCCTTACTACTATGCAACTACTGGTGTTATTTCACATGTGCCTCCTCGTGGTGGGCTGATGTATCAACATCTGGCATTGAGGCCCGGATGGGGGGCTAATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAGTTTCTAACAATACTAGGCAGCATGGGCAAAACAGGGGAAGGTTGAATGGGCATTCAGTAACACAGGGAAATACTCACTCTGCTACTTATTTACAACAAGCCCAGCAGATTTCTCAGTCAGTGATCTCTCCAAGAGAGACAAGCATTCAGCAGAGAACTGGTCAGGCAAAATATATGCCTAGTGGACGCCAGCGCGACATGGAAAAAGGATCCGGATCCTCATCTGGTGGTTCGAACGCTGGCGGAGGGTCCCCAGAAATGCTGCATAGCTTGCTAGCTGGTGCTGCTCCTGAGCAGCAGAAAGAGATACTCGGGGAGCATCTTTACATGCTTGTTCACAAACTAAAGCCTAGCCTAGCAGCAAAAATAACGGGGATGCTCTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAATCGCCGGAGTCTCTTTCTGCAAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCGAAGAGCAAGGTTTCTGGCCAGGATGTACTTCATTCAAATTACCTTTCAGCTGAGGTTGCAGTTAACTGA 1902 0.4679 MAVPPSVAAAPASLYVGDLHPDVSEGQLVDAFSDFKTLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIEVKNNSMLNGKAIRVMWSRRDPDARKNTIGNLFVKNLPDSVDNAGLQDMFKKYGNILSSKVVMSDDGKSKGYGFVQFETEESSSVAIDKLNGSAVGDKQLYVGKFVKKSDRVLPGPDARYTNLYMKNLDPDITEAILQEKFSTFGKIISLAIAKDNCGMPKGFGFVNYDNPDDAKKAMETMNGSQLGAKVLYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNVYVKNIDDNVNDEELRHHFSPCGTITSAKVMRDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYAQQMAGLAGPSTAIIPGGYPPYYYATTGVISHVPPRGGLMYQHLALRPGWGANGFAPPARSFQQSPVPAVSNNTRQHGQNRGRLNGHSVTQGNTHSATYLQQAQQISQSVISPRETSIQQRTGQAKYMPSGRQRDMEKGSGSSSGGSNAGGGSPEMLHSLLAGAAPEQQKEILGEHLYMLVHKLKPSLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKSKVSGQDVLHSNYLSAEVAVN 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02450 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Cca03g02450 633 MobiDBLite consensus disorder prediction 519 533 - -
Cca03g02450 633 Gene3D - 535 614 - -
Cca03g02450 633 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 536 613 IPR002004 GO:0003723
Cca03g02450 633 SUPERFAMILY RNA-binding domain, RBD 184 275 IPR035979 GO:0003676
Cca03g02450 633 Coils Coil 263 283 - -
Cca03g02450 633 SMART rrm2_1 101 173 IPR003954 GO:0003676
Cca03g02450 633 SMART rrm2_1 192 264 IPR003954 GO:0003676
Cca03g02450 633 SMART rrm2_1 295 367 IPR003954 GO:0003676
Cca03g02450 633 SMART rrm2_1 13 86 IPR003954 GO:0003676
Cca03g02450 633 CDD RRM2_I_PABPs 99 174 IPR045305 -
Cca03g02450 633 SMART rrm1_1 192 264 IPR000504 GO:0003723
Cca03g02450 633 SMART rrm1_1 13 86 IPR000504 GO:0003723
Cca03g02450 633 SMART rrm1_1 295 367 IPR000504 GO:0003723
Cca03g02450 633 SMART rrm1_1 101 173 IPR000504 GO:0003723
Cca03g02450 633 PANTHER RNA BINDING PROTEIN 529 618 - -
Cca03g02450 633 PANTHER RNA BINDING PROTEIN 5 511 - -
Cca03g02450 633 CDD RRM4_I_PABPs 293 371 - -
Cca03g02450 633 Pfam Poly-adenylate binding protein, unique domain 544 608 IPR002004 GO:0003723
Cca03g02450 633 Gene3D - 274 382 IPR012677 -
Cca03g02450 633 PANTHER POLYADENYLATE-BINDING PROTEIN 529 618 - -
Cca03g02450 633 PANTHER POLYADENYLATE-BINDING PROTEIN 5 511 - -
Cca03g02450 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Cca03g02450 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Cca03g02450 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Cca03g02450 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Cca03g02450 633 Gene3D - 181 273 IPR012677 -
Cca03g02450 633 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 609 IPR006515 GO:0003723
Cca03g02450 633 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Cca03g02450 633 Gene3D - 5 100 IPR012677 -
Cca03g02450 633 MobiDBLite consensus disorder prediction 439 540 - -
Cca03g02450 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Cca03g02450 633 SUPERFAMILY PABC (PABP) domain 526 620 IPR036053 GO:0003723
Cca03g02450 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Cca03g02450 633 Gene3D - 101 180 IPR012677 -
Cca03g02450 633 SMART poly_2 548 611 IPR002004 GO:0003723
Cca03g02450 633 MobiDBLite consensus disorder prediction 441 510 - -
Cca03g02450 633 CDD RRM1_I_PABPs 13 92 - -
Cca03g02450 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Cca03g02450 633 SUPERFAMILY RNA-binding domain, RBD 291 386 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02450 Cca-Chr3 45564689 45569479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02450 12 631 Eukaryotic Initiation Factors Gene Family AT2G36660 53.760 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02450 K13126 - gmx:100804671 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02450 03 45564689 45569479 Cca03g02450 03 45564689 45569479 ECH