Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02445 atgGACACAGTGCTGGTACCTCCTTGGCTTGAACAACTTCTACACACACCCTTCTTCAGCGTGTGTCGGATTCACGCAGACGCCGCTAGGAGCGAATGTAACATGTTCTGCCTAGACTGTAATAATGCTGATGCCTTTTGCTTCTATTGCCGTTCTTCCAGACACAAAGATCATCAAGTCATTCAGATAAGGCGATCCTCGTACCACGATGTGGTGAGAGTGGCTGAAATTCAGAAGATGTTAGACATCAGTGGAGTGCAGACGTATGTGATCAACAGTGCGCGAGTGTTGTTCCTTAACGTGAGGCCCCAGCCAAAATCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGCGGAAGGAGCCTCTTGGACCCGTTTCGGTTCTGTTCTTTGGGATGTAAGCTTGAAGGAATAAAGAAAAATGGGGATGCAAGCTTTGCTTTGGATGGTGGGAATGAAGAATTGACAATGGATGCTACTAGAAAGGGATCGGTCTCATCGAGACAGCAAGAAGAAGGATTGCGTGATGGATCAACACAAGACATGTATCCAGCCACGCCTCCTCCACCTGCTTCCAATGCAAGGAGAAGAAAAGGCATTCCTCATAGGGCACCTTTTGCTTCATGA 627 0.4705 MDTVLVPPWLEQLLHTPFFSVCRIHADAARSECNMFCLDCNNADAFCFYCRSSRHKDHQVIQIRRSSYHDVVRVAEIQKMLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFALDGGNEELTMDATRKGSVSSRQQEEGLRDGSTQDMYPATPPPPASNARRRKGIPHRAPFAS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02445 208 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 207 - -
Cca03g02445 208 Pfam PLATZ transcription factor 64 135 IPR006734 -
Cca03g02445 208 MobiDBLite consensus disorder prediction 159 173 - -
Cca03g02445 208 MobiDBLite consensus disorder prediction 157 208 - -
Cca03g02445 208 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02445 Cca-Chr3 45533006 45535176 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Cca03g02445 PLATZ 6.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02445 - - gmx:100803076 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02445 03 45533006 45535176 Cca02g00490 02 10461147 10462957 PCT