Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02444 ATGTTGAATTCCTACGTGACCCCTCTGCTTCTCTCCGCTGCCGGCATAATTTGCTCCTCTCTAGCCATAGCAGTGTACCACTGCATCCTCTTGAGGCACTTCGTTAGGCACCACGCAGCGCAACACAGTGATGACAGCACAGACACAAGCCACGCCGAGAACAACGTAGGGGTCCAAGAGGAAATCCTCAACAAAATCCCGCTTTTCTCATTCACAACAGAAAAGAGCGATTGCATTTATCATTTGAAACAAAACGAATGCTCCATTTGCCTTGGACAATGGGAGGATAGAGATGTCGTAAGGTTGTTACCATCTTGTAAACATGCTTTTCATAGACATTGCATCGATGCATGGTTCATCGACCATGCCAATTGCCCCGTTTGCCGCTCACCAATCACTCGTGATTTCGAGTTAGCATCGTTGCCACTAGCTTCAGAAAATAATAACGTGGAAAACGAACAAAGGGAATTGCATGTGCATGATCAGGATATTAATATTCCACGTGATCATCATTATCATCCATTGGTTAATGATGATGTGAGTGGTTCAGGTTCCACTTCCACCCCAAGATTTCAACGACCATGCCGTGCGTTGCTTCACGCGCACTCTCTATCATCTCACATGCGGAGAAAGCCGCGAGGTTTGATCATGGGTTTGAAAAGGTCCTTGTCTTTGGATCAAACGTCGTCGTATATTGCAATTACTGTACAAAGAGATCTCGGAGAGGCTTCCACCTCTTCTTCTACGAAAGGGGTCATGACGAGTTTGTGTAACTATAGATCAAGATGGGATTTAATGAGATCCTTCTCGCAGTTTCGGAACAGTAGTGAAAGTGGGAGATACAATGGGATTCTTCCCACTTGA 864 0.4549 MLNSYVTPLLLSAAGIICSSLAIAVYHCILLRHFVRHHAAQHSDDSTDTSHAENNVGVQEEILNKIPLFSFTTEKSDCIYHLKQNECSICLGQWEDRDVVRLLPSCKHAFHRHCIDAWFIDHANCPVCRSPITRDFELASLPLASENNNVENEQRELHVHDQDINIPRDHHYHPLVNDDVSGSGSTSTPRFQRPCRALLHAHSLSSHMRRKPRGLIMGLKRSLSLDQTSSYIAITVQRDLGEASTSSSTKGVMTSLCNYRSRWDLMRSFSQFRNSSESGRYNGILPT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02444 287 SMART ring_2 87 128 IPR001841 -
Cca03g02444 287 PANTHER RING-H2 FINGER PROTEIN ATL73-LIKE 4 268 - -
Cca03g02444 287 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 268 IPR044675 -
Cca03g02444 287 CDD RING-H2_PA-TM-RING 86 129 - -
Cca03g02444 287 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Cca03g02444 287 SUPERFAMILY RING/U-box 86 137 - -
Cca03g02444 287 Coils Coil 143 163 - -
Cca03g02444 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 134 IPR013083 -
Cca03g02444 287 Pfam Ring finger domain 85 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02444 Cca-Chr3 45523529 45524529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02444 11 150 C3H Transcription Factor Family AT5G17600 29.139 6.66e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02444 - - aprc:113863869 296.589