Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02441 ATGGCCGCAGCCGCCAAGCCGGAATCGGAATCCGCCACGGTTCCAACGGATCAACCTTGCAAAGTTTCCATGGTGAATGGTTACATTGTCTACACTCGAGCCAAGAGGCCTCTCGGTTCGTCCAACGGTTTTTCTGGACACGTGGAATTAACCGCGAATGCGGAGCTGGCAGTTGAACCGGGGAACGGAGAGTGTAACGAGATGAAGAACGAGTCCCCTGACGTAGCGGGGAGGACGCCCAAGCGGTGTCGGCGATCGTCCTCGAAAGCGATGGTTGAGTGTAGTGATCAGGCGGTGGTGACTGAGTCGGAGCAAGTTGGGAATTGTGAAAGTGGAATCAACGGTCCGAAGAGCAAGATGGAGTTGAAGATGTCCAAGAAGATTGTCGTCAACAGGAAGCCTATGACTGTGAAGGAGCTATTTGATACAGGTTTGCTTGATGGGGTCTCTGTGGTTTACATGGGAGGCATTAAGAAGGCTTCGGGTTTACGAGGTGTGATTAGAGATGGAGGAATATTGTGCTCGTGCAGTCTATGCAATGGAGGCAGAGTCATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCTGCGCAATATATTTGTCTCGAAAATGGAAAGAGCCTGCTTGATCTGTTGAGAGCATGTAGAGGATCTACCCTACATACTTTGGAGGTGACAGTTCAAAATTTTGTTTGTTCTCAACCCGAAGAAAAATATTTTACCTGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCATTTGTAGAAAGAGTGGGGCCCATATGCCGCTCTTGTGTGGAATCAAAGAAGTCTGAAGAAAGTTCAGATGACATAGTTGGCAAAAGAGTTAGGTCTCCTAGACCAGTCCTACTCTCCAAACCATCCAGTACTTCTGAGCTGTCTGTCTCTTCACAAATTAGGAGACACTGGAAGAAAAGAACAAAGTCATCAAAAAGGGTTAACCATTCAAGTTCTTCCAAGAATGTTTCTTTGGCCGTTCTACCCCGGAAGAAAAATTTGTTGAAGATGAAAAAGAAGTCACGGTCTGTAAAGGTGAAGTCTTCGGAAAAAACTTCAAATTCAAAGTGCTCATCTAATAAGAGTCAATGGAAGATAACCAAGAAGGATCAGCGGTTGCATAAGTTAGTTTTTGAGGAAAATGGATTGCCCGATGGAACTGAAGTAGCTTATTATGCCCGTGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCCTATGCATACATTTACACATCAAATGGGGTGTCTCTCCATGAGTTAGCAATATCTCTCTCAAAGGATCGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGTAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCTGCTCTATCAAGTATTCCGCGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAGAAGTTTGTGGCACACAATGCCAATGCCATGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATTACCAATAGATGCATTCGCATAGTCAAAGACATTGAAGCCGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGATTTCAGCAGATCTGGCTTTGGTCCACGCACAATAATACTGTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGCTTGAGGGATCACAAGATGGCATATTTAAAGGAATTGCCGCAAGGTAATTGGCTTTGTTGCAATGATTGCACAAGAATACATTCTACTTTGGACAACCTTCTGGTAAGGGGGTCCGAGAGACTCCCTGAATCTCTCTTGAGTGTTATAAAGAAGAAGCAAGAGGAAAAAGGATTAGAACCCATCAATGATATTGATGTAAGATGGAGGCTTCTTAATGGTAAAATTGCTTCTGCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTTAATCCTATAGTTGACGCTGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGGAGGAATGTGAGGAATCAGGAATTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGAATTTTTGGCACAGATATTGCTGAACTCCCTTTAGTTGCAACTAGTAATGGGAACCATGGAAAGGGCTACTTCCAAACACTCTTCTCCTGCATCGAGAGGCTCCTGGCTTTCTTGAATGTGAAGACCCTTGTGTTGCCAGCTGCAGAAGAAGCAGAATCCATATGGACGGATAAATTTGAGTTTAGCAAGATGAAACCAGATCAGGTTACAAACTATAGAAAACACTGCAATCAGATGGTCACGTTCAAAGGGACAAATATGCTGCATAAAATGGTGCCTCCGTGTCGGGTCATCAATAATCAATCATGA 2532 0.4427 MAAAAKPESESATVPTDQPCKVSMVNGYIVYTRAKRPLGSSNGFSGHVELTANAELAVEPGNGECNEMKNESPDVAGRTPKRCRRSSSKAMVECSDQAVVTESEQVGNCESGINGPKSKMELKMSKKIVVNRKPMTVKELFDTGLLDGVSVVYMGGIKKASGLRGVIRDGGILCSCSLCNGGRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGSTLHTLEVTVQNFVCSQPEEKYFTCKRCKGCFPSSFVERVGPICRSCVESKKSEESSDDIVGKRVRSPRPVLLSKPSSTSELSVSSQIRRHWKKRTKSSKRVNHSSSSKNVSLAVLPRKKNLLKMKKKSRSVKVKSSEKTSNSKCSSNKSQWKITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECAALSSIPRGDWYCQFCQNMFQREKFVAHNANAMAAGRVEGVDPIEQITNRCIRIVKDIEAELSGCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPQGNWLCCNDCTRIHSTLDNLLVRGSERLPESLLSVIKKKQEEKGLEPINDIDVRWRLLNGKIASAETRPLLLEAVSIFHECFNPIVDAASGRDLIPAMVYGRNVRNQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNGNHGKGYFQTLFSCIERLLAFLNVKTLVLPAAEEAESIWTDKFEFSKMKPDQVTNYRKHCNQMVTFKGTNMLHKMVPPCRVINNQS 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02441 843 MobiDBLite consensus disorder prediction 294 308 - -
Cca03g02441 843 MobiDBLite consensus disorder prediction 358 372 - -
Cca03g02441 843 MobiDBLite consensus disorder prediction 347 374 - -
Cca03g02441 843 MobiDBLite consensus disorder prediction 280 332 - -
Cca03g02441 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 562 624 IPR013083 -
Cca03g02441 843 ProSitePatterns Zinc finger PHD-type signature. 478 517 IPR019786 -
Cca03g02441 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 552 IPR013083 -
Cca03g02441 843 Pfam PHD-finger 478 519 IPR019787 -
Cca03g02441 843 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 74 839 - -
Cca03g02441 843 ProSiteProfiles Zinc finger PHD-type profile. 475 520 IPR019787 -
Cca03g02441 843 SUPERFAMILY FYVE/PHD zinc finger 557 619 IPR011011 -
Cca03g02441 843 Pfam Tify domain binding domain 415 461 IPR032308 -
Cca03g02441 843 Pfam Tify domain binding domain 165 220 IPR032308 -
Cca03g02441 843 PANTHER AUTOIMMUNE REGULATOR 74 839 - -
Cca03g02441 843 SUPERFAMILY FYVE/PHD zinc finger 464 522 IPR011011 -
Cca03g02441 843 SMART PHD_3 565 622 IPR001965 -
Cca03g02441 843 SMART PHD_3 477 518 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02441 Cca-Chr3 45460248 45473631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02441 126 840 PHD Transcription Factor Family AT2G36720 54.348 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca03g02441 TDBD 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02441 - - gmx:100802562 1441.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02441 03 45460248 45473631 Cca02g00484 02 10298962 10311230 PCT
Cca02g01360 02 32060385 32064908 Cca03g02441 03 45460248 45473631 PCT