Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02440 ATGGGATTCAACAGAACCCTTTGGCTTTCTGGCTTTGTCATTTTTCTCATTTCAATCATATTTGTTCTTTATACAACACCGCCACCTTCCCCGACCTCTGACACGGCCATTAGCCCTCAAGATAGTTTCAGTTTCCAGCTTGAAATATTTACCAAGATTATAAAGTTTAGTGGAGCTCAGGACTTTGTGTCTCTGATAACAAGTGTAGCTAGGAGGAGACATCATCATCACCGGAGCCATAAGGAAAAATGTGACGGGTCCAAATGGAATTCAAGGCTTATTCAAGACTATAATGTGAGTCAAGTTTTAACGGTTGACTTACAGGGTTGTGCTAACTTCAGTAGCGTGCAGAAAGCCGTTGATGCTGTTCCTGAATCCAGCTCTGATACCACCCTTATCATCATAGATAATGGTACATACAGGGAGAAGGTAGTGGTGCAGGCCAACAAAACAAACTTGATAATTGAAGGTCAAGGGTATCTGAATACAATCATAGAATGGAATGACACAGCAAATTCCACCGGCGGGACTTCCTATAGCTACTCCTTTGCCATCTTTGCCACTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCTCCACCGCCACCAGGAGTGGTTGGGGCACAAGCGGTGGCACTGAGAGTTACCGGTGATCAAGTTGCTTTCTATGGGTGTGGGTTTTATGGTGCGCAGGACACACTCAATGATGACAATGGGAGGCATTATTTTAAAGAATGTTTTATCCAAGGATCCATTGATTTCATATTTGGAAGTGCCAGATCACTTTACGAGGACTGTACCATAAAGTGTGTGGCCAAAGAAGGGGATGAGATTAGCGGGTCTATCACCGCTCAAGGGAGGGAATCGGAGGATGAGTCAAGTGGGTTTTCCTTTGTGAATTGTAGCATTGTTGGGAGTGGAAGAGTGTGGCTTGGAAGAGCTTGGGGACCCTATGCCACTGTGGTTTTCTCAAGAACATATATGTCTCATGTCGTAGCTCCTGATGGATGGAACGATTGGAATGATCGCTCTAGAGACCGGAGCGTTTTCTTTGGGGAGTACCGTTGTCTTGGACCTGGAGCAAATTTTACATCCAGAGTCTCTTATGCCAAGCAACTCACGGATTACCAAGCTAACTCCTACATGGATATTTCCTACATTGATGGAAATGATTGGCTTCTTAATTATTTTCAAAACTCTATGTTAATTAACCCTTCATATACCTAA 1236 0.4369 MGFNRTLWLSGFVIFLISIIFVLYTTPPPSPTSDTAISPQDSFSFQLEIFTKIIKFSGAQDFVSLITSVARRRHHHHRSHKEKCDGSKWNSRLIQDYNVSQVLTVDLQGCANFSSVQKAVDAVPESSSDTTLIIIDNGTYREKVVVQANKTNLIIEGQGYLNTIIEWNDTANSTGGTSYSYSFAIFATKFTAYNISFKNTAPPPPPGVVGAQAVALRVTGDQVAFYGCGFYGAQDTLNDDNGRHYFKECFIQGSIDFIFGSARSLYEDCTIKCVAKEGDEISGSITAQGRESEDESSGFSFVNCSIVGSGRVWLGRAWGPYATVVFSRTYMSHVVAPDGWNDWNDRSRDRSVFFGEYRCLGPGANFTSRVSYAKQLTDYQANSYMDISYIDGNDWLLNYFQNSMLINPSYT 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02440 411 Gene3D - 96 402 IPR012334 -
Cca03g02440 411 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 403 - -
Cca03g02440 411 SUPERFAMILY Pectin lyase-like 100 396 IPR011050 -
Cca03g02440 411 Pfam Pectinesterase 104 393 IPR000070 GO:0030599|GO:0042545
Cca03g02440 411 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
Cca03g02440 411 PANTHER PECTINESTERASE 14-RELATED 11 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02440 Cca-Chr3 45450870 45455627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02440 96 396 Carbohydrate Esterase AT1G05310 54.098 7.70e-119 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02440 - - gmx:100802034 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02440 03 45450870 45455627 Cca02g01309 02 31320057 31321908 PCT